View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18185_high_1 (Length: 840)
Name: NF18185_high_1
Description: NF18185
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18185_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 540; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 540; E-Value: 0
Query Start/End: Original strand, 10 - 824
Target Start/End: Original strand, 3916161 - 3916958
Alignment:
| Q |
10 |
caaaggccaaaacaaacaaagtttataccaaaacaagcaagttataaacgtcggcggcggtggtaacggaaaacctccatacccttcgggttcgtaaaca |
109 |
Q |
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| T |
3916161 |
caaaggccaaaacaaacaaagtttataccaaaacaagcaagttataaacgtcggcggcggtggtaacggaaaacctccatacccttcgggttcgtaaaca |
3916260 |
T |
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| Q |
110 |
cttccatcctttggtggttcagctcctctaccggcagcttcggtgtgtccgttcagaatcgccgtaacaaggagaactaaaacaagtgaaccagtgatgg |
209 |
Q |
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| T |
3916261 |
cttccatcctttggtggttcagctcctctaccggcagcttcgatgtggccgttcagaatcgccgtaacaaggagaactaaaacaagtgaaccagtgatgg |
3916360 |
T |
|
| Q |
210 |
gttttgccatagtgtatataagttactcttgaagnnnnnnnnnnnnnnnnctcttgtgtttgtatgaataaactgtctccaaaatcactccaatttatag |
309 |
Q |
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| T |
3916361 |
tttttgccatagtgtatataagttactcttgaagttttttt----------tctcgtgtttgtatgaataaattttctccaaaatcactccaatttatag |
3916450 |
T |
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| Q |
310 |
aacttaaggctagagtgatgagaactattgatttcttacaatggaagtgaattaaatttaccttatcttgaggaaattgatattagcaaaagttaatt-a |
408 |
Q |
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||||||||||||||||||||||||||||||||||| || ||| ||||||||||||| |||| ||||| | ||||||||||| ||| |||| |||||| | |
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| T |
3916451 |
aacttaaggctagagtgatgagaactattgatttcctaaaatagaagtgaattaaaattacattatcgtaaggaaattgattttaacaaagcttaattga |
3916550 |
T |
|
| Q |
409 |
aggtagctgaaaaacgtgttgcaagttgcaaccatggttttaaag-attaaggatcatagtttccttttacttatgttgtttaaggttgagcagttttta |
507 |
Q |
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| T |
3916551 |
aagtagctgaaaaacgtgttgcaagatgaaaccatggttttaaagtattaaggattttagtttccttttacttatgttgtttaaggttgacatgcttttt |
3916650 |
T |
|
| Q |
508 |
gttacataaggaataaatagaaagtaattaagttaaaggatagaataactaatgaatgaatagaaatatggtgtgatccaattgggccattgattatgcg |
607 |
Q |
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| T |
3916651 |
gttacatgaggaataaatagaaagtaattatgttaaaggatagaataactaatgaatgaatagaaatacagtgtgatccaattgggtcatt--------g |
3916742 |
T |
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| Q |
608 |
gtttgtcttcacttgtcaaatggaaaagttcattacatgttgatatattttcaatagtgtaacattcttaatttgttgttcatgcttgtgtgaatgtaat |
707 |
Q |
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| T |
3916743 |
gtttgtcttcacttgtaaaatggacaagttcattccatgttgatatcttttcaatagtttaacatttttaatttgttgtgcatgcttgtgtgaaagtaat |
3916842 |
T |
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| Q |
708 |
tactagttagttgtttcttgaaagcttcaatttcagatgaaaatgctaattctttttatttttcaaagctcctaaaaaagatactcaatgctctcacaaa |
807 |
Q |
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| T |
3916843 |
tactagttagttgtttcttgaaagcttcaatttcagatgaaaatactaattctttttatttttcaaaggtcctaaaaaa-atactcaatgctctcacaaa |
3916941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 161 - 225
Target Start/End: Complemental strand, 5398604 - 5398543
Alignment:
| Q |
161 |
ttcagaatcgccgtaacaaggagaactaaaacaagtgaaccagtgatgggttttgccatagtgta |
225 |
Q |
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|||| |||||||| |||||||||||| |||||||||||| ||| ||| ||||||||||||||| |
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| T |
5398604 |
ttcaaaatcgccgcaacaaggagaaccaaaacaagtgaagcag---tggattttgccatagtgta |
5398543 |
T |
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