View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18185_high_4 (Length: 525)
Name: NF18185_high_4
Description: NF18185
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18185_high_4 |
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Alignment Details
Target: chr8 (Bit Score: 347; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 44 - 462
Target Start/End: Complemental strand, 1418670 - 1418253
Alignment:
| Q |
44 |
atatacatacgtaaatggatctcttttataaacaacaaattactatctttcaaacaaagattaaagttcagtataacataacatcatatataaatacacg |
143 |
Q |
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| T |
1418670 |
atatagatacgtaaatggatctcttttataaacaacaaattactatctttgaaacaaagattaaagttcagtataacataacatcatatataaatacacg |
1418571 |
T |
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| Q |
144 |
acaatatccctcaatcatgtattatatgnnnnnnnnnttcataactaataattaatcaaaacatatataattgttttattggaacgacattgttggatca |
243 |
Q |
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| T |
1418570 |
acaatatccctcaatcatgtattatatgaaaaaaaaat-cacaactaataattaatcaaaacatatataattgttttattggaacgacattgttggatca |
1418472 |
T |
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| Q |
244 |
aaaagacgtaaaacattcgtgttcagaagaattagagtcgtcacaaggagagtgattgtgtctgccttcataagtggttattaccatacgacaatcttct |
343 |
Q |
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| T |
1418471 |
aaaagacgtaaaacattcgtgttcagaagaattagagtcgtcacaaggagagtgattgtgtctgccttcataagtggttattaccatacgacaatcttct |
1418372 |
T |
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| Q |
344 |
gagagtcgttcaactcnnnnnnncacccgacaattgttatgtgtgcaacgataataacttctgcatataataacatgtaaataattaattagtatagaac |
443 |
Q |
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| T |
1418371 |
gagagtcgttcaactctttttttcacccgacaattgttatgtgtgcaacgataataacttctgcatataataacatgtaaataattaattagtatagtac |
1418272 |
T |
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| Q |
444 |
taataaataacggaattat |
462 |
Q |
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| T |
1418271 |
taataaataacggaattat |
1418253 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 445 - 514
Target Start/End: Complemental strand, 1418239 - 1418170
Alignment:
| Q |
445 |
aataaataacggaattattcctaacaaaataaatagctgaaataaagcatatttaaagacatgcatgatg |
514 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1418239 |
aataaataacggaaatattcctaacaaaataaatagctgaaataaagcatatttaaagacatgcatgatg |
1418170 |
T |
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