View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18185_high_9 (Length: 333)
Name: NF18185_high_9
Description: NF18185
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18185_high_9 |
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Alignment Details
Target: chr1 (Bit Score: 312; Significance: 1e-176; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 1 - 320
Target Start/End: Complemental strand, 52771174 - 52770855
Alignment:
| Q |
1 |
catctttggttctcttgtctgtggcattctcaaatcaaacctcagcagcagcatcaaatgctaccggatggcttgcagttttgggtttgatactgtatat |
100 |
Q |
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| T |
52771174 |
catctttggttctcttgtctgtggcattctcaaatcaaacctcggcagcagcatcaaatgctaccggatggcttgcagttttgggtttgatactgtatat |
52771075 |
T |
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| Q |
101 |
agcttttttctcccctgggatgggaccagtgccgtgggcaatgaactcagagatatatcctaaagaatatagaggaatttgtggtggtatgtcagctact |
200 |
Q |
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| T |
52771074 |
agcttttttctcccctgggatgggaccagtgccgtgggcaatgaactcagagatatatcctaaagaatatagaggaatttgtggtggtatgtcagctact |
52770975 |
T |
|
| Q |
201 |
gtgtgttgggtttccaatctcattgtgtctcagacatttctttctgttgctgaagctttagggactggtcctactttcttgattcttgctgtaataaccg |
300 |
Q |
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| T |
52770974 |
gtgtgttgggtttccaatctcattgtgtctcagacatttctttctgttgctgaagctttagggactggtcctactttcttgattcttgctgtaataaccg |
52770875 |
T |
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| Q |
301 |
tgcttgcctttttatctgtg |
320 |
Q |
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| T |
52770874 |
tgcttgcctttttatttgtg |
52770855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 66 - 290
Target Start/End: Complemental strand, 52767145 - 52766921
Alignment:
| Q |
66 |
ggatggcttgcagttttgggtttgatactgtatatagcttttttctcccctgggatgggaccagtgccgtgggcaatgaactcagagatatatcctaaag |
165 |
Q |
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| T |
52767145 |
ggatggcttgcggttgttggtttggccctatatattgcatttttctcgccagggatggggcctgtgccgtgggcagtaaactctgaagtatatccgcagg |
52767046 |
T |
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| Q |
166 |
aatatagaggaatttgtggtggtatgtcagctactgtgtgttgggtttccaatctcattgtgtctcagacatttctttctgttgctgaagctttagggac |
265 |
Q |
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| T |
52767045 |
agtaccgaggaatgtgtggagggatgtcagctactgtgaattggatttcaaatttgattgtggctcagtcatttctttccattgcagaagctgcagggac |
52766946 |
T |
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| Q |
266 |
tggtcctactttcttgattcttgct |
290 |
Q |
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| T |
52766945 |
tggtcctacattcttgcttcttgct |
52766921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 144 - 292
Target Start/End: Original strand, 392778 - 392926
Alignment:
| Q |
144 |
aactcagagatatatcctaaagaatatagaggaatttgtggtggtatgtcagctactgtgtgttgggtttccaatctcattgtgtctcagacatttcttt |
243 |
Q |
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|||||||||||||||||| |||||||| |||| || ||||| || ||| |||| || ||||||||| |||| ||| | || ||||| ||| ||||||| |
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| T |
392778 |
aactcagagatatatcctgaagaatatcgaggtatatgtgggggcatggcagcgaccgtgtgttggatttcaaatttgatcgtgtccgagagctttcttt |
392877 |
T |
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| Q |
244 |
ctgttgctgaagctttagggactggtcctactttcttgattcttgctgt |
292 |
Q |
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| T |
392878 |
cgattgctgacgctatcgggattgcttcaactttcttgattattgctgt |
392926 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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