View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18185_low_10 (Length: 352)
Name: NF18185_low_10
Description: NF18185
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18185_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 275; Significance: 1e-154; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 19 - 326
Target Start/End: Original strand, 6323688 - 6324003
Alignment:
| Q |
19 |
aggtgtagggttgagatcacatctctcaaatcagcaactgtca--------ataacaacattataaatgacgaagtacctcaccttgatcattttggctt |
110 |
Q |
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| T |
6323688 |
aggtgtagggttgagatcacatctctcaaatcagcaactgtcagcctgccaataacaacattataaatgacgaagtacctcaccttgatcattttggctt |
6323787 |
T |
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| Q |
111 |
ccctcattttccgaatgttgtgtccaaatcaatatatcctttcactggtacaccatttccgataacatccttgagatatgcttctaatggtttcagcatt |
210 |
Q |
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| T |
6323788 |
ccctcattttccgaatgttgtgtccaaatcaatatatcctttcactggtacaccatttccgataacacccttgagatatgcttctaatggtttcagcatt |
6323887 |
T |
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| Q |
211 |
gtctctgacagtcccatcttcaagaacgcggaccagtagagaatgttcgcgtatgaagaggaacattagttcttgtgatcaatgtgaagtcattgtctga |
310 |
Q |
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| T |
6323888 |
gtctctaacagtcccatcttcaagaacgcggaccagtagagaatgttcacgtatgaagaggaacattagttcttgtgatcaatgtgaagtcattgtctga |
6323987 |
T |
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| Q |
311 |
aaacgagattggcatg |
326 |
Q |
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| T |
6323988 |
aaacgagattggcatg |
6324003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 76 - 261
Target Start/End: Original strand, 6310095 - 6310281
Alignment:
| Q |
76 |
aatgacgaagtacctcaccttgatcattttggc-ttccctcattttccgaatgttgtgtccaaatcaatatatcctttcactggtacaccatttccgata |
174 |
Q |
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| T |
6310095 |
aatgacaaagtaccttaccttaatcatcttcacattccctcctttaccgaatgttgtgtccaaatcaacgtatcctttgaccggcacaccatcgccaaaa |
6310194 |
T |
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| Q |
175 |
acatccttgagatatgcttctaatggtttcagcattgtctctgacagtcccatcttcaagaacgcggaccagtagagaatgttcgcg |
261 |
Q |
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| T |
6310195 |
gtacccttcagaaatccttcaaatggtttcagcattgactcttccagtcccatcttcaagaatgcggaccagtaaagaatgttcgcg |
6310281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 79 - 256
Target Start/End: Original strand, 6317874 - 6318052
Alignment:
| Q |
79 |
gacgaagtacctcaccttgatcattttggc-ttccctcattttccgaatgttgtgtccaaatcaatatatcctttcactggtacaccatttccgataaca |
177 |
Q |
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| T |
6317874 |
gacgaagtacctgaccttgatggttttggtattctcacctttaccaaaagttgtgtccaaatcaatgtatcctttgactggtacaccttttccaaaagta |
6317973 |
T |
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| Q |
178 |
tccttgagatatgcttctaatggtttcagcattgtctctgacagtcccatcttcaagaacgcggaccagtagagaatgt |
256 |
Q |
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| T |
6317974 |
tacttgagaaatgcttgacatggtttgagcattgattctgaaagtcccatcttcaagaatgcggaccagtagagaatgt |
6318052 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 79 - 256
Target Start/End: Original strand, 6327116 - 6327294
Alignment:
| Q |
79 |
gacgaagtacctcaccttgatcattttggc-ttccctcattttccgaatgttgtgtccaaatcaatatatcctttcactggtacaccatttccgataaca |
177 |
Q |
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|||||||||||| |||||||| |||||| ||| | | ||| || || ||||||||||||||||| |||||||||||||||| ||| ||||| | | | |
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| T |
6327116 |
gacgaagtacctgaccttgatggttttggtattctcacctttaccaaaagttgtgtccaaatcaatgtatcctttcactggtaaaccttttccaaaagta |
6327215 |
T |
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| Q |
178 |
tccttgagatatgcttctaatggtttcagcattgtctctgacagtcccatcttcaagaacgcggaccagtagagaatgt |
256 |
Q |
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| T |
6327216 |
cccttgagaaatccttgacatggtttgagcattgattcttgtagtttcatcttcaagaatgcggaccagtaaagaatgt |
6327294 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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