View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18185_low_12 (Length: 291)
Name: NF18185_low_12
Description: NF18185
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18185_low_12 |
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Alignment Details
Target: chr8 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 24 - 274
Target Start/End: Original strand, 23439757 - 23440013
Alignment:
| Q |
24 |
aactttctatattaattaaatcatcatgtgactagttatttacaagaatcttaatcaattacag------taccttggacttttgagcagaagcttggtg |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||| |
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| T |
23439757 |
aactttctatattaattaaatcatcatgtgactagttatttacaagaatcttaatcaattacaggtgtagttccttggacttttgagcagaagcttggtg |
23439856 |
T |
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| Q |
118 |
aagcagtatttatacctgctggatgccctcaccaagttcgaaatctaaaggtgtaacatctcttatcatataatagtagacaactttgctttatttttgt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
23439857 |
aagcagtatttatacctgctggatgccctcaccaagttcgaaatctgaaggtgtaacatctcttatcatataattgtagacaactttgctttatttttgt |
23439956 |
T |
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| Q |
218 |
gtttatttatggagattaattgtgatattttttcttgaaacaggtaaaaaagatgat |
274 |
Q |
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| T |
23439957 |
gtttaattatggggattaattgtgatattttttcttgaaacaggtaaaaaagatgat |
23440013 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 135; Significance: 2e-70; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 24 - 191
Target Start/End: Complemental strand, 8673134 - 8672961
Alignment:
| Q |
24 |
aactttctatattaattaaatcatcatgtgactagttatttacaagaatcttaatcaattacag------taccttggacttttgagcagaagcttggtg |
117 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
8673134 |
aactttctagattaattaaatcatcatgtgactagttatttacaagaatcttaatcaattacaggtgtagtaccttggacttttgagcagaagcttggtg |
8673035 |
T |
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| Q |
118 |
aagcagtatttatacctgctggatgccctcaccaagttcgaaatctaaaggtgtaacatctcttatcatataat |
191 |
Q |
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| T |
8673034 |
aagcactatttatacctgctggatgccctcaccaagttcgaaatctgaaggtgaaacatctcttatcatataat |
8672961 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 38 - 191
Target Start/End: Complemental strand, 8719417 - 8719258
Alignment:
| Q |
38 |
attaaatcatcatgtgactagttatttacaagaatcttaatcaattacag------taccttggacttttgagcagaagcttggtgaagcagtatttata |
131 |
Q |
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||||| ||||||||||| | ||||||||||||||||||||||||||||| |||||| ||||||||||||||| ||||||||||||||||||||| |
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| T |
8719417 |
attaattcatcatgtgattcattatttacaagaatcttaatcaattacaggtgtagtacctttgacttttgagcagaaacttggtgaagcagtatttata |
8719318 |
T |
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| Q |
132 |
cctgctggatgccctcaccaagttcgaaatctaaaggtgtaacatctcttatcatataat |
191 |
Q |
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| T |
8719317 |
cctgctggatgccctcaccaagtcagaaatctgaaggtgaaacatctcttatcatataat |
8719258 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 56 - 191
Target Start/End: Complemental strand, 8591563 - 8591421
Alignment:
| Q |
56 |
tagttatttacaagaatctt-aatcaattacag------taccttggacttttgagcagaagcttggtgaagcagtatttatacctgctggatgccctca |
148 |
Q |
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| T |
8591563 |
tagttatttacatgaatctttaatcaattacaggtgtagtacctttgacttttgagcagaaacttggtgaagcagtatttatacttgctggatgccctca |
8591464 |
T |
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| Q |
149 |
ccaagttcgaaatctaaaggtgtaacatctcttatcatataat |
191 |
Q |
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| T |
8591463 |
ccaagtcagaaatctgaaggtgaaacatctcttatcatataat |
8591421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 202 - 274
Target Start/End: Complemental strand, 8591106 - 8591034
Alignment:
| Q |
202 |
tttgctttatttttgtgtttatttatggagattaattgtgatattttttcttgaaacaggtaaaaaagatgat |
274 |
Q |
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|||||||| ||||||||||||||||| | | |||||||||||| ||||| || ||||| ||||||| ||||| |
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| T |
8591106 |
tttgctttgtttttgtgtttatttatcgggtttaattgtgatacttttttatggaacagttaaaaaatatgat |
8591034 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 187 - 228
Target Start/End: Complemental strand, 8718962 - 8718921
Alignment:
| Q |
187 |
ataatagtagacaactttgctttatttttgtgtttatttatg |
228 |
Q |
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| T |
8718962 |
ataattgtagacaactttgcttaatatttgtgtttatttatg |
8718921 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 93 - 154
Target Start/End: Complemental strand, 55410166 - 55410105
Alignment:
| Q |
93 |
tggacttttgagcagaagcttggtgaagcagtatttatacctgctggatgccctcaccaagt |
154 |
Q |
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| T |
55410166 |
tggacttttgagcaaaaacttggggaggcagtatttattcctgctggatgcccacatcaagt |
55410105 |
T |
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