View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18185_low_2 (Length: 766)
Name: NF18185_low_2
Description: NF18185
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18185_low_2 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 644; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 644; E-Value: 0
Query Start/End: Original strand, 18 - 756
Target Start/End: Complemental strand, 37633366 - 37632627
Alignment:
| Q |
18 |
cttctaaccaaaatacgctctcattttaattataatatgattcctcttagattaaataatgatcaagtgcgtatatttgaatcaatatatatttagataa |
117 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||| |||||||||||||||||||||| |
|
|
| T |
37633366 |
cttctaatcaaaatacgctctcattttaattataatatgattcctcttaaattaaataatgatcaaacgcgtatattcgaatcaatatatatttagataa |
37633267 |
T |
|
| Q |
118 |
tatatgactgcaaaacctaacaatttaaatgcaaataatagttctaaaaattctatggattatacaaatgaagaactacatttttagttgtggattattt |
217 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37633266 |
tatacgactgcaaaacctaacaatttaaatgcaaataatagttctaaaaattctaaggattatacaaatgaagaactacatttttagttgtggattattt |
37633167 |
T |
|
| Q |
218 |
aactagttcaaaaaatgccatgcgctgaaatgttaaacaaatgtactctaatttgtatgaaaatataggtacatacgaaaataacaaagatgcacaccgc |
317 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
37633166 |
aactagttcaaaaaatgccaagcgctgaaatgttaaacaaatgtactctaatttgtatgaaaatataggtacatacgaaaatatcaaagatgcacaccgc |
37633067 |
T |
|
| Q |
318 |
atttcagtcctaaaggtgttttggtgcagccgcaagttttgatttgctgctatttctgctatgctgctaattttctggttttggtggtgtttttgtacag |
417 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
37633066 |
atttcagtcctaaaggtgttttggtgcagccacaagttttgatttgctgctatttctgctatgctgttaattttctggttttggtggtgtttttgtacag |
37632967 |
T |
|
| Q |
418 |
cagtaagttatgtttgctactatttttgtttgtttgagtcctagggtgttcatggttgttttgaggttcatgtattcgtgggttagcaacatgtttttgg |
517 |
Q |
| |
|
|| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37632966 |
caaaaagttatatttgctactatttttgtttgtttgagtcctagggtgttcatggttgttttgaggttcatgtattcgtgggttagcaacatgtttttgg |
37632867 |
T |
|
| Q |
518 |
tctgtatggctactctctggcaggcaatttttgggttatctttgtatgccttgtcattggtgtatgactttgtatggtgtattgtc-ccccttcgagcac |
616 |
Q |
| |
|
| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||| |
|
|
| T |
37632866 |
tttgtatggctactctctggcaggcaattttggggttatctttgtatgccttgtcattggtgtatgactgtgtatggtgtattgtccccccttcgagcac |
37632767 |
T |
|
| Q |
617 |
atatagtggaagccttttccaacccttcatagaaggtgggtagaggtatcttgttgtgatgcttgcggcagagtttttaatattttaattcatcgagaaa |
716 |
Q |
| |
|
|||||||| ||||| |||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37632766 |
atatagtgtaagccctttccaacccttcatagaaggtgggtagagttatcttgttatgatgcttgcggcagagtttttaatattttaattcatcgagaaa |
37632667 |
T |
|
| Q |
717 |
aacaacaaaaatgaagaagtatgaattgcatgtagaataa |
756 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
37632666 |
aacaacaaaaatgcagaagtatgaattgcatgtagaataa |
37632627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 69; Significance: 1e-30; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 430 - 606
Target Start/End: Complemental strand, 45220676 - 45220501
Alignment:
| Q |
430 |
tttgctactatttttgtttgtttgagtcctagggtgttcatggttgttttgaggttcatgtattcgtgggttagcaacatgtttttggtctgtatggcta |
529 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||| |||||||||||| |||||||||||| ||| ||||||||| |||||||||| |||||||| |
|
|
| T |
45220676 |
tttgctgctatttttgtttgtttgagtcctagggtgtccatggttgttttatggttcatgtattggtgagttagcaacctgtttttggtttgtatggcat |
45220577 |
T |
|
| Q |
530 |
ctctctggcaggcaatttttgggttatctttgtatgccttgtcattggtgtatgactttgtatggtgtattgtcccc |
606 |
Q |
| |
|
||| ||| ||| |||||| | ||| | |||| |||| ||||||| ||||||||||| ||||||||||||||| |
|
|
| T |
45220576 |
gtctttggtaggaaattttggtgttttatttgctcagcttgccattggt-tatgactttgtgtggtgtattgtcccc |
45220501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 448 - 618
Target Start/End: Complemental strand, 28697503 - 28697333
Alignment:
| Q |
448 |
tgtttgagtcctagggtgttcatggttgttttgaggttcatgtattcgtgggttagcaacatgtttttggtctgtatggctactctctggcaggcaattt |
547 |
Q |
| |
|
||||||||||||| ||||| | |||||||||| |||||| |||||| ||| |||||||| |||||||||||||||| || |||| |||| || ||| | |
|
|
| T |
28697503 |
tgtttgagtcctatggtgtccgtggttgttttaaggttcttgtattggtgaattagcaacctgtttttggtctgtatagcatctctttggcgggtaatat |
28697404 |
T |
|
| Q |
548 |
ttgggttatctttgtatgccttgtcattggtgtatgactttgtatggtgtattgtcccccttcgagcacat |
618 |
Q |
| |
|
| ||||||||||||||||||| |||||||||||| ||||||||| | |||||| | ||||||| ||||| |
|
|
| T |
28697403 |
cggtgttatctttgtatgccttgccattggtgtatgtctttgtatgatctattgtacaccttcgaacacat |
28697333 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 52; Significance: 2e-20; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 371 - 517
Target Start/End: Complemental strand, 18329884 - 18329737
Alignment:
| Q |
371 |
ttctgctatgctgctaattttctggttttggtggtgtttttgtacagcagtaagttatg-tttgctactatttttgtttgtttgagtcctagggtgttca |
469 |
Q |
| |
|
||||||||||||||||||||| ||||||||| ||||| || |||||| ||||| | |||||| ||||||||||||||| ||||||| ||||| || |
|
|
| T |
18329884 |
ttctgctatgctgctaattttacacttttggtggggttttggtgcagcagaaagttctaatttgctgctatttttgtttgttcaagtcctatggtgtcca |
18329785 |
T |
|
| Q |
470 |
tggttgttttgaggttcatgtattcgtgggttagcaacatgtttttgg |
517 |
Q |
| |
|
|| | |||| ||||||||||||| ||| ||||||||| ||||||||| |
|
|
| T |
18329784 |
tgttgcttttaaggttcatgtattggtgagttagcaacctgtttttgg |
18329737 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University