View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18185_low_4 (Length: 734)
Name: NF18185_low_4
Description: NF18185
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18185_low_4 |
 | |
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| [»] scaffold0041 (1 HSPs) |
| | |
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Alignment Details
Target: chr2 (Bit Score: 641; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 641; E-Value: 0
Query Start/End: Original strand, 7 - 719
Target Start/End: Complemental strand, 40665672 - 40664957
Alignment:
| Q |
7 |
acatcatcataaccaacttcatcaagtctttcttcatcctctcttttcacaggttccccctcacagaagacctcagtgtctggagcaaccacacagaact |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||| |||| ||| |
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|
| T |
40665672 |
acatcatcataaccaacttcatcaagtctttcttcatcatctcttttcacaggttccccctcacagaagatctcagtgtctggagcaaccgtacagtact |
40665573 |
T |
|
| Q |
107 |
ccccaggatcagtttcaatgaccttaaactctacacttctcatccctccccgcacaagaaatagatctccttttctgacgggacgataagcttccacgaa |
206 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40665572 |
caccaggatcagtttcaatgaccttaaactctacacttctcatccctccccgcacaagaaatagatctccttttctgacgggacgataagcttccacgaa |
40665473 |
T |
|
| Q |
207 |
atacgctgtaaattacatacattaaaaaagttaagacttgtgcaaa--gattaacatatacatataacatattcaaaatgtaaaattataatgcctctaa |
304 |
Q |
| |
|
||| ||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40665472 |
ataggctgtaaattatatacattaaaaaagttaagacttgtgcaaaaagattaacatatacatataacatattcaaaatgtaaaattataatgcctctaa |
40665373 |
T |
|
| Q |
305 |
gacactaaagtttaaagattagacaaagctagcaaaaccaagtgatgaaaggtgggaactcacgtttcaagaatgcatcaaagagatttccagtgagacc |
404 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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|
| T |
40665372 |
gaaactaaagtttaaagattagacaaagctagcaaaaccaagtgatgaaaggtgggaactcacgtttcaagaaagcatcaaagagatttccagtgagacc |
40665273 |
T |
|
| Q |
405 |
ttcaattgtatcatcaataggcagaatgtgcacacgtttaccatacttgacatcaggacactgatgcacagacacaacatctccaagccgaactcgcaaa |
504 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
40665272 |
ttcaattgtatcatcaataggcagaatgtgcacacgtttaccatacttgacatcagtacactgatgcacagacacaacatctccaagccgaactcgcaaa |
40665173 |
T |
|
| Q |
505 |
ttcgacctcacaactttgttcatcctaatcctaggctcttcacagctatcatcagcaagagcaatacaaacagtatccttccttttctttccctgcaaca |
604 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| ||||||||||||||||||||||||||| |
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|
| T |
40665172 |
ttcgacctcacaactttgttcatcctaatcctaggctcttcacaggtatcatcaccaagagcaatacaaacactatccttccttttctttccctgcaaca |
40665073 |
T |
|
| Q |
605 |
caacataaaccacattaacaaatatt-ttttaacattgaaattaagtattatatgatcacaattttatatatacgaaattttgttcttacatgtgtccat |
703 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
40665072 |
caacataaaccacattaacaaatatttttttaacattgaaattaagtattatatgatcacaattttatatatacgaaattttgttcttacatgtgtccat |
40664973 |
T |
|
| Q |
704 |
tatatatattcattct |
719 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
40664972 |
tatatatattcattct |
40664957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 326 - 631
Target Start/End: Original strand, 40725193 - 40725498
Alignment:
| Q |
326 |
gacaaagctagcaaaaccaagtgatgaaaggtgggaactcacgtttcaagaatgcatcaaagagatttccagtgagaccttcaattgtatcatcaatagg |
425 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
40725193 |
gacaaagctagcaaaaccaagtgatgaaaggtgggaactcacgtttcaagaaagcatcaaagagatttccagtgagaccttcaattgtatcatcaatagg |
40725292 |
T |
|
| Q |
426 |
cagaatgtgcacacgtttaccatacttgacatcaggacactgatgcacagacacaacatctccaagccgaactcgcaaattcgacctcacaactttgttc |
525 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
40725293 |
cagaatgtgcacacgtttaccatacttgacatcagtacactgatgcacagacacaacatctccaagccgaactcgcaaattcgacctcacaactttgttc |
40725392 |
T |
|
| Q |
526 |
atcctaatcctaggctcttcacagctatcatcagcaagagcaatacaaacagtatccttccttttctttccctgcaacacaacataaaccacattaacaa |
625 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
40725393 |
atcctaatcctaggctcttcacaggtatcatcaccaagagcaatacaaacactatccttccttttctttccctgcaacacaacataaaccacattaacaa |
40725492 |
T |
|
| Q |
626 |
atattt |
631 |
Q |
| |
|
|||||| |
|
|
| T |
40725493 |
atattt |
40725498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 181; E-Value: 2e-97
Query Start/End: Original strand, 7 - 267
Target Start/End: Original strand, 40724382 - 40724641
Alignment:
| Q |
7 |
acatcatcataaccaacttcatcaagtctttcttcatcctctcttttcacaggttccccctcacagaagacctcagtgtctggagcaaccacacagaact |
106 |
Q |
| |
|
|||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| ||||||||| |
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|
| T |
40724382 |
acatcatcataaccgacttcatcaagcctttcttcatcctctcttttcacgggttccccctcgcagaagacctcagtgtctggagcaaccgcacagaact |
40724481 |
T |
|
| Q |
107 |
ccccaggatcagtttcaatgaccttaaactctacacttctcatccctccccgcacaagaaatagatctccttttctgacgggacgataagcttccacgaa |
206 |
Q |
| |
|
||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||| |||| ||| |
|
|
| T |
40724482 |
ccccaggatcagtttcattgaccttaaattctacacttctcatccctccccgcacaagaaatagatctccttttctgaccggacaataagcctccaagaa |
40724581 |
T |
|
| Q |
207 |
atacgctgtaaattacatacattaaaaaagttaagacttgtgcaaagattaacatatacat |
267 |
Q |
| |
|
||| ||||||||||| |||||| ||||||||| ||||||||||| ||| || |||||||| |
|
|
| T |
40724582 |
ataggctgtaaattagatacatcaaaaaagtt-agacttgtgcagagacaaaaatatacat |
40724641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0041 (Bit Score: 62; Significance: 2e-26; HSPs: 1)
Name: scaffold0041
Description:
Target: scaffold0041; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 361 - 598
Target Start/End: Complemental strand, 109551 - 109314
Alignment:
| Q |
361 |
aactcacgtttcaagaatgcatcaaagagatttccagtgagaccttcaattgtatcatcaataggcagaatgtgcacacgtttaccatacttgacatcag |
460 |
Q |
| |
|
||||||||||| ||| |||||||||||||||| ||||| | |||||||| |||||||| | || |||||||| || | || ||||| |||||||||| |
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|
| T |
109551 |
aactcacgttttaagtatgcatcaaagagattcccagtaactccttcaatagtatcatcgacgggaagaatgtgaactctctttccatatttgacatcag |
109452 |
T |
|
| Q |
461 |
gacactgatgcacagacacaacatctccaagccgaactcgcaaattcgacctcacaactttgttcatcctaatcctaggctcttcacagctatcatcagc |
560 |
Q |
| |
|
||| |||||||| || |||||||||||||||| ||| | | ||| ||||||||| |||||||| || || | ||||||||||| | |||||||| |
|
|
| T |
109451 |
cacattgatgcaccgaaacaacatctccaagcctaaccctaagattgttcctcacaaccttgttcattcttatttttggctcttcacatgtttcatcagc |
109352 |
T |
|
| Q |
561 |
aagagcaatacaaacagtatccttccttttctttccct |
598 |
Q |
| |
|
|| |||||||| | |||||| ||||||||||| |||| |
|
|
| T |
109351 |
gagtgcaatacatatagtatctttccttttcttaccct |
109314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 62; Significance: 2e-26; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 361 - 598
Target Start/End: Original strand, 41093745 - 41093982
Alignment:
| Q |
361 |
aactcacgtttcaagaatgcatcaaagagatttccagtgagaccttcaattgtatcatcaataggcagaatgtgcacacgtttaccatacttgacatcag |
460 |
Q |
| |
|
||||||||||| ||| |||||||||||||||| ||||| | |||||||| |||||||| | || |||||||| || | || ||||| |||||||||| |
|
|
| T |
41093745 |
aactcacgttttaagtatgcatcaaagagattcccagtaactccttcaatagtatcatcgacgggaagaatgtgaactctctttccatatttgacatcag |
41093844 |
T |
|
| Q |
461 |
gacactgatgcacagacacaacatctccaagccgaactcgcaaattcgacctcacaactttgttcatcctaatcctaggctcttcacagctatcatcagc |
560 |
Q |
| |
|
||| |||||||| || |||||||||||||||| ||| | | ||| ||||||||| |||||||| || || | ||||||||||| | |||||||| |
|
|
| T |
41093845 |
cacattgatgcaccgaaacaacatctccaagcctaaccctaagattgttcctcacaaccttgttcattcttatttttggctcttcacatgtttcatcagc |
41093944 |
T |
|
| Q |
561 |
aagagcaatacaaacagtatccttccttttctttccct |
598 |
Q |
| |
|
|| |||||||| | |||||| ||||||||||| |||| |
|
|
| T |
41093945 |
gagtgcaatacatatagtatctttccttttcttaccct |
41093982 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 663 - 715
Target Start/End: Complemental strand, 38694521 - 38694469
Alignment:
| Q |
663 |
caattttatatatacgaaattttgttcttacatgtgtccattatatatattca |
715 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38694521 |
caattttatatatacgaaattttgttcttacatgtgtccattatatatattca |
38694469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 58; Significance: 5e-24; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 361 - 598
Target Start/End: Complemental strand, 27976174 - 27975937
Alignment:
| Q |
361 |
aactcacgtttcaagaatgcatcaaagagatttccagtgagaccttcaattgtatcatcaataggcagaatgtgcacacgtttaccatacttgacatcag |
460 |
Q |
| |
|
|||||||| || ||| | |||||||| ||||| ||||| | |||||||| |||||||||| ||| ||||| || || || || ||||| |||||||||| |
|
|
| T |
27976174 |
aactcacgctttaagtaagcatcaaatagattcccagtaaccccttcaatagtatcatcaacaggaagaatatgaactcgctttccatatttgacatcag |
27976075 |
T |
|
| Q |
461 |
gacactgatgcacagacacaacatctccaagccgaactcgcaaattcgacctcacaactttgttcatcctaatcctaggctcttcacagctatcatcagc |
560 |
Q |
| |
|
|||| ||||| ||||| |||||||| ||||||| ||| | | ||| |||||||| || ||||| || ||| | ||||||||||| | |||||||| |
|
|
| T |
27976074 |
gacattgatgaacagaaacaacatcaccaagcctaaccctaagattgtttctcacaaccttattcattcttatctttggctcttcacatgtttcatcagc |
27975975 |
T |
|
| Q |
561 |
aagagcaatacaaacagtatccttccttttctttccct |
598 |
Q |
| |
|
||| |||||||||| |||||||| |||||||| |||| |
|
|
| T |
27975974 |
aagtgcaatacaaatcgtatcctttcttttcttaccct |
27975937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 56; Significance: 8e-23; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 663 - 718
Target Start/End: Complemental strand, 9855869 - 9855814
Alignment:
| Q |
663 |
caattttatatatacgaaattttgttcttacatgtgtccattatatatattcattc |
718 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9855869 |
caattttatatatacgaaattttgttcttacatgtgtccattatatatattcattc |
9855814 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 663 - 712
Target Start/End: Complemental strand, 11874321 - 11874272
Alignment:
| Q |
663 |
caattttatatatacgaaattttgttcttacatgtgtccattatatatat |
712 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||| |||||||||||||| |
|
|
| T |
11874321 |
caattttatatagacgaaattttgttcttacatgtttccattatatatat |
11874272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 687 - 719
Target Start/End: Original strand, 3433515 - 3433547
Alignment:
| Q |
687 |
ttcttacatgtgtccattatatatattcattct |
719 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
3433515 |
ttcttacatgtgtccattatatatattcattct |
3433547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 663 - 719
Target Start/End: Complemental strand, 39308846 - 39308790
Alignment:
| Q |
663 |
caattttatatatacgaaattttgttcttacatgtgtccattatatatattcattct |
719 |
Q |
| |
|
||||||||||||||| || || | |||||||||||||| ||||||||||||||||| |
|
|
| T |
39308846 |
caattttatatatacaaatttgttttcttacatgtgtctgttatatatattcattct |
39308790 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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