View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18185_low_5 (Length: 668)
Name: NF18185_low_5
Description: NF18185
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18185_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 571; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 571; E-Value: 0
Query Start/End: Original strand, 19 - 625
Target Start/End: Original strand, 1608388 - 1608994
Alignment:
| Q |
19 |
gcaatgtcgatgcaatgtcgtgcagcagcaacaaagataaactgtcaatgcaaagaacaggagaagtttaacatttttgcaacaaaatatcaaattttgc |
118 |
Q |
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| T |
1608388 |
gcaatgtcgatgcaatgtcgtgcagcagcaacaaagataaactgtcaatgcaaagaacaggagaagtttaacttttttgcaacaaaatatcaaattttgc |
1608487 |
T |
|
| Q |
119 |
acagatatattctttctgacttcatcaaactccaatcttgagtagtaaagaaaatacatttgtgacaaacatacatgtctaaatcaactaaaccacataa |
218 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
1608488 |
acagatatattctttctgacttcatcaaactccaattttgagtagtaaagaaaatacatttgtgacaaacatacatgcctaaatcaactaaaccacataa |
1608587 |
T |
|
| Q |
219 |
gccctttaccctagaatttaatttgaatcatcgcaaactatcataagcaaaatgagctaaaatgttgaacctttatgcattggaagccggtaaccatagc |
318 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1608588 |
gccctttaccctagaatttaatttgaatcatcacaaactatcataagcaaaatgagctaaaatgttgaacctttatgcattggaagccggtaaccatagc |
1608687 |
T |
|
| Q |
319 |
attgtcacttacaccatcactgctatgactaaccatcactaagggaatataaaaggtaggagataatgattaagaggactaagaagtttatgagctttga |
418 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||| |||||||| |
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| T |
1608688 |
attgtcacttacaccatcactgctatgactaaccatcactaagggaatagaaaaggtaggagataatgattaagaggaataagaagtttattagctttga |
1608787 |
T |
|
| Q |
419 |
gaaagttattgaagagtaaagattgttgtgatctggtctttgaaattgtttttcatgatttagtgagaaatgagtttttatgagattttgtaaagtttga |
518 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1608788 |
taaagttattgaagagtgaagattgttgtgatctggtctttgaaattgtttttcatgatttagtgagaaatgagtttttatgagattttgtaaagtttga |
1608887 |
T |
|
| Q |
519 |
aatttgcagagtaattaaattgaaatttggtaaagtttgaaggttttactatttgtgagacacttttctttttcctcgctatggtcaatgaattatagga |
618 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1608888 |
aatttgcagagtaattaaattgaaatttggtaaagtttgaaggttttactatttgtgagacacttttctttttcctcgctatggtcaatgaattatagga |
1608987 |
T |
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| Q |
619 |
aaatgtg |
625 |
Q |
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||||||| |
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| T |
1608988 |
aaatgtg |
1608994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 357 - 435
Target Start/End: Complemental strand, 11091533 - 11091455
Alignment:
| Q |
357 |
ctaagggaatataaaaggtaggagataatgattaagaggactaagaagtttatgagctttgagaaagttattgaagagt |
435 |
Q |
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||||| ||||| |||||||| ||||| |||||||||||| ||||| | ||||||||||||||||| || ||||||| |
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| T |
11091533 |
ctaagagaataaaaaaggtaagagattgtgattaagaggaagaagaaagtgatgagctttgagaaagtgatggaagagt |
11091455 |
T |
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