View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18185_low_7 (Length: 462)

Name: NF18185_low_7
Description: NF18185
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18185_low_7
NF18185_low_7
[»] chr7 (2 HSPs)
chr7 (16-443)||(32116736-32117166)
chr7 (168-199)||(31330513-31330544)
[»] chr5 (5 HSPs)
chr5 (168-200)||(2987970-2988002)
chr5 (168-198)||(2970349-2970379)
chr5 (168-196)||(11200513-11200541)
chr5 (168-196)||(26675457-26675485)
chr5 (168-196)||(26947065-26947093)
[»] chr8 (6 HSPs)
chr8 (168-214)||(5535753-5535799)
chr8 (163-217)||(23982362-23982416)
chr8 (168-197)||(31128533-31128562)
chr8 (168-196)||(1155114-1155142)
chr8 (168-196)||(31226447-31226475)
chr8 (168-196)||(37673734-37673762)
[»] chr6 (1 HSPs)
chr6 (170-200)||(7693896-7693926)
[»] scaffold0040 (1 HSPs)
scaffold0040 (168-197)||(55754-55783)
[»] chr1 (6 HSPs)
chr1 (167-196)||(43675172-43675201)
chr1 (168-200)||(11120670-11120702)
chr1 (168-200)||(11241452-11241484)
chr1 (168-196)||(25813854-25813882)
chr1 (168-196)||(27544490-27544518)
chr1 (168-196)||(43822894-43822922)
[»] chr4 (2 HSPs)
chr4 (168-196)||(39055280-39055308)
chr4 (168-196)||(45833966-45833994)
[»] chr3 (3 HSPs)
chr3 (168-196)||(13755130-13755158)
chr3 (168-196)||(13768531-13768559)
chr3 (168-196)||(46006056-46006084)
[»] chr2 (2 HSPs)
chr2 (168-196)||(26312589-26312617)
chr2 (168-196)||(36267101-36267129)


Alignment Details
Target: chr7 (Bit Score: 303; Significance: 1e-170; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 16 - 443
Target Start/End: Original strand, 32116736 - 32117166
Alignment:
Q  16 atggtgacggctaaagtttagaaaagagaaaagagataaagtttatacaacaatcacacaatcgaaatgcattgatgtaaagttggtaatgagaactatt 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| ||||||||||||||||||||||||||||    
T  32116736 atggtgacggctaaagtttagaaaagagaaaagagataaagtttatacaacaatcacacaattgaaaagcagtgatgtaaagttggtaatgagaactatt 32116835  T
Q  116 ttatggannnnnnnagagagtttgagtaattaagttcttaacaaacattttaattaaaaaattataaatgagtgatgtgtatacgaaaaattcatttaag 215  Q
    |||||||       |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  32116836 ttatggatttttt-agagagtttgagtaattaagttcttaacaagcattttaattaaaaaattataaatgagtgatgtgtatgcgaaaaattcatttaag 32116934  T
Q  216 aattgatagtatgcatgtcgaataataata-----atatatgtcggattaattatctaaatctgttaatatgacttaaatctttaaatagattaatatgt 310  Q
    ||||||||||||||||||||||||||||||     |||||||||||||||||||| ||||||| ||||||||| |||||||||||||||||||||||||     
T  32116935 aattgatagtatgcatgtcgaataataatatatatatatatgtcggattaattatttaaatctcttaatatgatttaaatctttaaatagattaatatgc 32117034  T
Q  311 tatataaaactttttaaaatgtcgaatttaaacttaacaatatttaggtttcgtcatagatgcattgaatgaaacgtgtgttgtcaacatttctttaaga 410  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| ||||||||||| |||||||||||||||||| | |||     
T  32117035 tatataaaactttttaaaatgttgaatttaaacttaacaatatttaggtttcgtcgtagatgtattgaatgaaatgtgtgttgtcaacatttc-tcaagt 32117133  T
Q  411 tataaaatcaagaatgagatacaatcaatgtaa 443  Q
    ||||||| | ||| |||||||| ||||||||||    
T  32117134 tataaaaccgagagtgagatacgatcaatgtaa 32117166  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 168 - 199
Target Start/End: Original strand, 31330513 - 31330544
Alignment:
Q  168 attaaaaaattataaatgagtgatgtgtatac 199  Q
    ||||||||||||||||||||||||||||||||    
T  31330513 attaaaaaattataaatgagtgatgtgtatac 31330544  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 168 - 200
Target Start/End: Original strand, 2987970 - 2988002
Alignment:
Q  168 attaaaaaattataaatgagtgatgtgtatacg 200  Q
    |||||||||||||||||||||||||||||||||    
T  2987970 attaaaaaattataaatgagtgatgtgtatacg 2988002  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 168 - 198
Target Start/End: Complemental strand, 2970379 - 2970349
Alignment:
Q  168 attaaaaaattataaatgagtgatgtgtata 198  Q
    |||||||||||||||||||||||||||||||    
T  2970379 attaaaaaattataaatgagtgatgtgtata 2970349  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 168 - 196
Target Start/End: Original strand, 11200513 - 11200541
Alignment:
Q  168 attaaaaaattataaatgagtgatgtgta 196  Q
    |||||||||||||||||||||||||||||    
T  11200513 attaaaaaattataaatgagtgatgtgta 11200541  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 168 - 196
Target Start/End: Complemental strand, 26675485 - 26675457
Alignment:
Q  168 attaaaaaattataaatgagtgatgtgta 196  Q
    |||||||||||||||||||||||||||||    
T  26675485 attaaaaaattataaatgagtgatgtgta 26675457  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 168 - 196
Target Start/End: Complemental strand, 26947093 - 26947065
Alignment:
Q  168 attaaaaaattataaatgagtgatgtgta 196  Q
    |||||||||||||||||||||||||||||    
T  26947093 attaaaaaattataaatgagtgatgtgta 26947065  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 168 - 214
Target Start/End: Complemental strand, 5535799 - 5535753
Alignment:
Q  168 attaaaaaattataaatgagtgatgtgtatacgaaaaattcatttaa 214  Q
    ||||||||||||||||||||||||||||| |||   |||||||||||    
T  5535799 attaaaaaattataaatgagtgatgtgtacacgtggaattcatttaa 5535753  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 163 - 217
Target Start/End: Original strand, 23982362 - 23982416
Alignment:
Q  163 ttttaattaaaaaattataaatgagtgatgtgtatacgaaaaattcatttaagaa 217  Q
    |||| ||||||||||||||||||||||||||||| |||  |||  ||||||||||    
T  23982362 tttttattaaaaaattataaatgagtgatgtgtacacgtgaaaaccatttaagaa 23982416  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 168 - 197
Target Start/End: Complemental strand, 31128562 - 31128533
Alignment:
Q  168 attaaaaaattataaatgagtgatgtgtat 197  Q
    ||||||||||||||||||||||||||||||    
T  31128562 attaaaaaattataaatgagtgatgtgtat 31128533  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 168 - 196
Target Start/End: Complemental strand, 1155142 - 1155114
Alignment:
Q  168 attaaaaaattataaatgagtgatgtgta 196  Q
    |||||||||||||||||||||||||||||    
T  1155142 attaaaaaattataaatgagtgatgtgta 1155114  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 168 - 196
Target Start/End: Complemental strand, 31226475 - 31226447
Alignment:
Q  168 attaaaaaattataaatgagtgatgtgta 196  Q
    |||||||||||||||||||||||||||||    
T  31226475 attaaaaaattataaatgagtgatgtgta 31226447  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 168 - 196
Target Start/End: Complemental strand, 37673762 - 37673734
Alignment:
Q  168 attaaaaaattataaatgagtgatgtgta 196  Q
    |||||||||||||||||||||||||||||    
T  37673762 attaaaaaattataaatgagtgatgtgta 37673734  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 170 - 200
Target Start/End: Complemental strand, 7693926 - 7693896
Alignment:
Q  170 taaaaaattataaatgagtgatgtgtatacg 200  Q
    |||||||||||||||||||||||||||||||    
T  7693926 taaaaaattataaatgagtgatgtgtatacg 7693896  T

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Target: scaffold0040 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0040
Description:

Target: scaffold0040; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 168 - 197
Target Start/End: Complemental strand, 55783 - 55754
Alignment:
Q  168 attaaaaaattataaatgagtgatgtgtat 197  Q
    ||||||||||||||||||||||||||||||    
T  55783 attaaaaaattataaatgagtgatgtgtat 55754  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 167 - 196
Target Start/End: Complemental strand, 43675201 - 43675172
Alignment:
Q  167 aattaaaaaattataaatgagtgatgtgta 196  Q
    ||||||||||||||||||||||||||||||    
T  43675201 aattaaaaaattataaatgagtgatgtgta 43675172  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 168 - 200
Target Start/End: Original strand, 11120670 - 11120702
Alignment:
Q  168 attaaaaaattataaatgagtgatgtgtatacg 200  Q
    |||||| ||||||||||||||||||||||||||    
T  11120670 attaaagaattataaatgagtgatgtgtatacg 11120702  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 168 - 200
Target Start/End: Complemental strand, 11241484 - 11241452
Alignment:
Q  168 attaaaaaattataaatgagtgatgtgtatacg 200  Q
    |||||||||||||||||||||| ||||||||||    
T  11241484 attaaaaaattataaatgagtggtgtgtatacg 11241452  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 168 - 196
Target Start/End: Original strand, 25813854 - 25813882
Alignment:
Q  168 attaaaaaattataaatgagtgatgtgta 196  Q
    |||||||||||||||||||||||||||||    
T  25813854 attaaaaaattataaatgagtgatgtgta 25813882  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 168 - 196
Target Start/End: Original strand, 27544490 - 27544518
Alignment:
Q  168 attaaaaaattataaatgagtgatgtgta 196  Q
    |||||||||||||||||||||||||||||    
T  27544490 attaaaaaattataaatgagtgatgtgta 27544518  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 168 - 196
Target Start/End: Original strand, 43822894 - 43822922
Alignment:
Q  168 attaaaaaattataaatgagtgatgtgta 196  Q
    |||||||||||||||||||||||||||||    
T  43822894 attaaaaaattataaatgagtgatgtgta 43822922  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 168 - 196
Target Start/End: Original strand, 39055280 - 39055308
Alignment:
Q  168 attaaaaaattataaatgagtgatgtgta 196  Q
    |||||||||||||||||||||||||||||    
T  39055280 attaaaaaattataaatgagtgatgtgta 39055308  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 168 - 196
Target Start/End: Original strand, 45833966 - 45833994
Alignment:
Q  168 attaaaaaattataaatgagtgatgtgta 196  Q
    |||||||||||||||||||||||||||||    
T  45833966 attaaaaaattataaatgagtgatgtgta 45833994  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 168 - 196
Target Start/End: Complemental strand, 13755158 - 13755130
Alignment:
Q  168 attaaaaaattataaatgagtgatgtgta 196  Q
    |||||||||||||||||||||||||||||    
T  13755158 attaaaaaattataaatgagtgatgtgta 13755130  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 168 - 196
Target Start/End: Complemental strand, 13768559 - 13768531
Alignment:
Q  168 attaaaaaattataaatgagtgatgtgta 196  Q
    |||||||||||||||||||||||||||||    
T  13768559 attaaaaaattataaatgagtgatgtgta 13768531  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 168 - 196
Target Start/End: Complemental strand, 46006084 - 46006056
Alignment:
Q  168 attaaaaaattataaatgagtgatgtgta 196  Q
    |||||||||||||||||||||||||||||    
T  46006084 attaaaaaattataaatgagtgatgtgta 46006056  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 168 - 196
Target Start/End: Original strand, 26312589 - 26312617
Alignment:
Q  168 attaaaaaattataaatgagtgatgtgta 196  Q
    |||||||||||||||||||||||||||||    
T  26312589 attaaaaaattataaatgagtgatgtgta 26312617  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 168 - 196
Target Start/End: Original strand, 36267101 - 36267129
Alignment:
Q  168 attaaaaaattataaatgagtgatgtgta 196  Q
    |||||||||||||||||||||||||||||    
T  36267101 attaaaaaattataaatgagtgatgtgta 36267129  T

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