View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18185_low_9 (Length: 357)
Name: NF18185_low_9
Description: NF18185
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18185_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 18 - 346
Target Start/End: Complemental strand, 3543062 - 3542734
Alignment:
| Q |
18 |
attaaatgtgactagctcttataagtttccttcgagtgagttaatcttattgaacctgttcgaacactagatgtgaatatctttcttagtcaaaatttga |
117 |
Q |
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| T |
3543062 |
attaaatgtgactagctcttataagtttccttcgagtgagttaatcttattgaacctgttcgaacactatatgtgaatatctttcttagtcaaaatttga |
3542963 |
T |
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| Q |
118 |
tctctagtttgacatgttgtaggagtctaacctcttctaactactgctaaattcaatccatgttggtgtttcaaattgcacaccttcataagtgattgtt |
217 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
3542962 |
tctctagtttgacatgttgtagaagtctaacctcttctaactactgctaaattcaatccatgttggtgtttcaaattgtacaccttcataagtgattgtt |
3542863 |
T |
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| Q |
218 |
atcattgcttgcattgcagtagttataatttgtattgcttgttgtggtgtaaaattatttgaagtttttactagatattatggtttattacttgcgaaga |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3542862 |
atcattgcttgcattgcagtagttataatttgtattgcttgttgtggtgtaaaattatttgaagtttttactagatattatggtttattacttgcgaaga |
3542763 |
T |
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| Q |
318 |
ctaataacactctatttagcgatattcat |
346 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
3542762 |
ctaataacactctatttagcgatattcat |
3542734 |
T |
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