View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18186_high_2 (Length: 370)

Name: NF18186_high_2
Description: NF18186
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18186_high_2
NF18186_high_2
[»] chr2 (1 HSPs)
chr2 (13-363)||(36848747-36849102)


Alignment Details
Target: chr2 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 13 - 363
Target Start/End: Original strand, 36848747 - 36849102
Alignment:
Q  13 catcacgtgcaatacgacgagtgtactgttgtatggagtacaaaggagcgaaagggataacagaactcgaaagctaagaacagaataatcccacgcacgc 112  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  36848747 catcacgtgcaatacgacgagtgtactgttgtatggagtacaatggaacgaaagggataacagaactcgaaagctaagaacagaataatcacacgcacgc 36848846  T
Q  113 acgcnnnnnnncaccactttaagattgttttgttttcccctaactttacgannnnnnnnnnnnnnnnnnnnnnnnntatatatataatcta-----tcaa 207  Q
    ||||       ||||||||||||||||||||||||||||||||||||||||                         |||||||||||||||     ||||    
T  36848847 acgcacaaaaacaccactttaagattgttttgttttcccctaactttacgaaacacaacacaacataaacacacactatatatataatctaatctatcaa 36848946  T
Q  208 aggttccaaacctcttacgaaattgtttttatttaatggttgatgcgtttttaatccaatgggagctcaaaagagcatccatgctggcaaaggttacaat 307  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36848947 aggttccaaacctcttacgaaattgtttttatttaatggttgttgcgtttttaatccaatgggagctcaaaagagcatccatgctggcaaaggttacaat 36849046  T
Q  308 ttcattcaacatttcataacaatctttcatttttctctgttttactattgatgatg 363  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36849047 ttcattcaacatttcataacaatctttcatttttctctgttttactattgatgatg 36849102  T

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