View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18186_high_3 (Length: 362)
Name: NF18186_high_3
Description: NF18186
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18186_high_3 |
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| [»] chr3 (4 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 184; Significance: 2e-99; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 159 - 362
Target Start/End: Original strand, 38244485 - 38244688
Alignment:
| Q |
159 |
gatgatgaaaatgaatacttctactacttcttctcatcttgatcttgatgtaggtttatcatcacaactacaagaactgccttctcaaactatcaattta |
258 |
Q |
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| T |
38244485 |
gatgatgaaaatgaatacttctactacttcttctcatcttgatcttcatgtaggcttatcatcacaactacaagaactgccttctcaaactatcaattta |
38244584 |
T |
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| Q |
259 |
tttgttactgatgttggggatattaacaagaatgataaaaggaagaagaagaagagcaatgaaaatatcgatgatggtaaaatccacagcctaccacaca |
358 |
Q |
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| T |
38244585 |
tttgttactgatgttagggatattaacaagaatgataaaaggaagaagaagaagagcaatgaaaatatcgatgatggtaaaattcacagcctaccacacg |
38244684 |
T |
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| Q |
359 |
agaa |
362 |
Q |
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|||| |
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| T |
38244685 |
agaa |
38244688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 1 - 119
Target Start/End: Original strand, 38244327 - 38244445
Alignment:
| Q |
1 |
gggatcaataattttggtagtcatgctccgggaatcaaaaaagcgatgctgattcttgaagctcagtttgggcatctgcaaacatcaacatcatcaatta |
100 |
Q |
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| T |
38244327 |
gggatcaataattttggtagtcatgctccgggaatcaaaaaagcgatgcagattcttgaagctcagtttggacatctgcaaacatcaacatcatcaatta |
38244426 |
T |
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| Q |
101 |
atattaatgatgacatcat |
119 |
Q |
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| T |
38244427 |
atattaatgatgacatcat |
38244445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 185 - 362
Target Start/End: Original strand, 38260812 - 38260988
Alignment:
| Q |
185 |
cttcttctcatcttgatcttgatgtaggtttatcatcacaactacaagaactgccttctcaaactatcaatttatttgttactgatgttggggatattaa |
284 |
Q |
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| T |
38260812 |
cttcttctcatcttgatctccatgtaggcttatcatcacaatcacaagaactgccttctcaaacaattaatatttcagttgctgatgttggg-atgttaa |
38260910 |
T |
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| Q |
285 |
caagaatgataaaaggaagaagaagaagagcaatgaaaatatcgatgatggtaaaatccacagcctaccacacaagaa |
362 |
Q |
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| T |
38260911 |
caagaacgatatgagaaagaagaagaagagaaatgaaaatattaatgatggaagaatccacagcctaccacacaagaa |
38260988 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 6 - 96
Target Start/End: Original strand, 38260624 - 38260714
Alignment:
| Q |
6 |
caataattttggtagtcatgctccgggaatcaaaaaagcgatgctgattcttgaagctcagtttgggcatctgcaaacatcaacatcatca |
96 |
Q |
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| T |
38260624 |
caataattttggtagtcatgctccgggaatcctaaaagcaatggagattcttgaaactcagtttgggcatttgcatacatcaacgtcatca |
38260714 |
T |
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