View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18186_low_2 (Length: 446)
Name: NF18186_low_2
Description: NF18186
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18186_low_2 |
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| [»] chr7 (3 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 184; Significance: 2e-99; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 251 - 446
Target Start/End: Complemental strand, 33489276 - 33489081
Alignment:
| Q |
251 |
gattgctaaattggttgagcaaatagaaaccacggtctctaaacatggttttgagtttccatgtattcctagacaatacaagtggcaacaacacgcatag |
350 |
Q |
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| T |
33489276 |
gattgctaaattggttgagcaaatagaaaccacggtctctaaacatggttttgagtttccatgtattcctagacaatacaagtggcaacaacacgcatag |
33489177 |
T |
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| Q |
351 |
aaaaaatcagcggtgccgctacaataaacaatagaaaccaaaccactgattttgttttaccgttaaaacaaaaacagctgtttcagctaacagaaa |
446 |
Q |
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| T |
33489176 |
aaaaaatcatcggtgccgctacaataaacaatagaaaccaaaccactgattttgttataccgttaaaacaaaaactgctgtttcagctaacagaaa |
33489081 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 1 - 141
Target Start/End: Complemental strand, 33490021 - 33489881
Alignment:
| Q |
1 |
ttctttatgtgaaaaaaccatgaattctcaattaaaattgattttgactataaaatttgcagcttttatctttataaatgttttttattgttcaactcgt |
100 |
Q |
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| T |
33490021 |
ttctttatgtgaaaagaccatgaattctcaattaaaattgattttgactataaaatttgcagcttttatctttataaatgttttttattgttcaactcgt |
33489922 |
T |
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| Q |
101 |
ataaatgatttttattgatcaactcattttatgtaaacata |
141 |
Q |
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| T |
33489921 |
ataaatgatttttattgatcaactcattttatgtaaacata |
33489881 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 135 - 228
Target Start/End: Complemental strand, 33489368 - 33489275
Alignment:
| Q |
135 |
aaacataagttcgattcttaaactaatcagttcttgatcgaactttannnnnnncttaggcgaacttcatattatagggatagatcctttatga |
228 |
Q |
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| T |
33489368 |
aaacctaagttcaattcttaaactaatcagttcttgatcgaactttatatttttcttaggcgaacttcatattatagggatagatcctttatga |
33489275 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 296 - 354
Target Start/End: Complemental strand, 44679658 - 44679602
Alignment:
| Q |
296 |
tggttttgagtttccatgtattcctagacaatacaagtggcaacaacacgcatagaaaa |
354 |
Q |
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| T |
44679658 |
tggttttgagtttccatgtattcctagacaatac--gtggcaacaacacgcatataaaa |
44679602 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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