View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18186_low_5 (Length: 322)
Name: NF18186_low_5
Description: NF18186
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18186_low_5 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 1 - 309
Target Start/End: Complemental strand, 46685007 - 46684700
Alignment:
| Q |
1 |
atgagatggacatcatcatctgaatgattttcataggttactctatttgctgtgcactgtgctggatgcttttattatcttcttgccgcgcgttatcatg |
100 |
Q |
| |
|
||||||||||| | || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46685007 |
atgagatggac-taataatctgaatgattttcataggttactctatttgctgtgcactgtgctggatgcttttattatcttcttgccgcgcgttatcatg |
46684909 |
T |
|
| Q |
101 |
atccagaaaagacgtggattggcgaatcaatgaaagatttccttcagcagtccttgtggacaagatatgttacgactatttactggtccatcactacttt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46684908 |
atccagaaaagacgtggattggcgaatcaatgaaagatttccttcagcagtccttgtggacaagatatgttacgactatttactggtccatcactacttt |
46684809 |
T |
|
| Q |
201 |
aacaacagttggttatggagatttgcatccggtgaatgaaagagagatgatctttgtcatattttacatgctctttaatctaggattaacagcatatctg |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46684808 |
aacaacagttggttatggagatttgcatccggtgaatgaaagagagatgatctttgtcatattttacatgctctttaatctaggattaacagcatatctg |
46684709 |
T |
|
| Q |
301 |
attggtaac |
309 |
Q |
| |
|
||||||||| |
|
|
| T |
46684708 |
attggtaac |
46684700 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University