View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18186_low_6 (Length: 308)

Name: NF18186_low_6
Description: NF18186
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18186_low_6
NF18186_low_6
[»] chr5 (9 HSPs)
chr5 (8-294)||(19606716-19607002)
chr5 (12-294)||(7192081-7192363)
chr5 (12-277)||(10603828-10604093)
chr5 (8-208)||(10610782-10610982)
chr5 (8-142)||(10661088-10661222)
chr5 (52-280)||(10558036-10558264)
chr5 (66-277)||(10653067-10653278)
chr5 (8-89)||(10748071-10748152)
chr5 (156-275)||(10589297-10589416)
[»] chr6 (1 HSPs)
chr6 (8-280)||(12931351-12931623)
[»] chr2 (1 HSPs)
chr2 (8-280)||(17924268-17924540)
[»] chr3 (1 HSPs)
chr3 (8-94)||(31468213-31468299)


Alignment Details
Target: chr5 (Bit Score: 263; Significance: 1e-146; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 8 - 294
Target Start/End: Complemental strand, 19607002 - 19606716
Alignment:
Q  8 aagcataggaaactgtcaaaagttacaatccatagtcctttttcaaaataatcttagtggaaccatacccttagaggtttttagtctttcctctttatca 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  19607002 aagcataggaaactgtcaaaagttacaatccatagtcctttttcaaaataatcttagtggaaccatacccttagaggtttttcgtctttcctctttatca 19606903  T
Q  108 atattactggttttgtcaaaaaactctttcagtggcaacttaccgaaagaagtcggtatgctaacaaaaatagataccttagatgtctctgacaatcaac 207  Q
    |||||||||| ||||||||||||||| ||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||    
T  19606902 atattactggatttgtcaaaaaactcattcagtggcaacttaccgaaagaagtcagtatgctaacaacaatagataccttagatgtctctgacaatcaac 19606803  T
Q  208 tttctggtaacatttctgaaaccattggtgaatgcataagcttagaatatctttattttcaaggaaactcctttcacggaatcatac 294  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  19606802 tttctggtaacatttctgaaaccattggtgaatgcataagcttagaatatctttattttcaagggaactcctttcacggaatcatac 19606716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 12 - 294
Target Start/End: Original strand, 7192081 - 7192363
Alignment:
Q  12 ataggaaactgtcaaaagttacaatccatagtcctttttcaaaataatcttagtggaaccatacccttagaggtttttagtctttcctctttatcaatat 111  Q
    |||||||||||  |||||||||||| | | | ||||   ||||| |||||||| ||||||||||||||||| ||||| |||||||| || |||||||  |    
T  7192081 ataggaaactgcaaaaagttacaatacctggaccttgcacaaaacaatcttagaggaaccatacccttagaagttttcagtctttcttcgttatcaaact 7192180  T
Q  112 tactggttttgtcaaaaaactctttcagtggcaacttaccgaaagaagtcggtatgctaacaaaaatagataccttagatgtctctgacaatcaactttc 211  Q
    |||||   ||||||| |||||| || ||||| | | |||| | |||||| |||||||||| ||  ||  | |   |||||||||| || ||||  || ||    
T  7192181 tactgaacttgtcaagaaactcattgagtggtagcctaccaagagaagtgggtatgctaaaaagtatcaacaagctagatgtctcggagaatcttctatc 7192280  T
Q  212 tggtaacatttctgaaaccattggtgaatgcataagcttagaatatctttattttcaaggaaactcctttcacggaatcatac 294  Q
    |||| ||||| ||  | ||||||| ||||||||| |||||||||| || | ||| ||||||||||||||  |||||| |||||    
T  7192281 tggtgacattcctagagccattggcgaatgcatacgcttagaatacctctttttgcaaggaaactccttcaacggaaccatac 7192363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 12 - 277
Target Start/End: Original strand, 10603828 - 10604093
Alignment:
Q  12 ataggaaactgtcaaaagttacaatccatagtcctttttcaaaataatcttagtggaaccatacccttagaggtttttagtctttcctctttatcaatat 111  Q
    |||||||| |||||||||||||||| | ||| | |||  ||||| || ||||| ||  ||||||| |||||  |||||||| ||||||||||  |||  |    
T  10603828 ataggaaattgtcaaaagttacaatacctagacttttcacaaaacaaccttagagggtccatacctttagatatttttagtatttcctctttgacaaatt 10603927  T
Q  112 tactggttttgtcaaaaaactctttcagtggcaacttaccgaaagaagtcggtatgctaacaaaaatagataccttagatgtctctgacaatcaactttc 211  Q
    |||| |  ||||||  ||||   || ||||| | |||||| |||||||| |||||||||| ||| || |||   |||||||||||||| |||||  | |     
T  10603928 tacttgacttgtcacgaaacaaattgagtggtagcttaccaaaagaagtgggtatgctaaaaaatattgattggttagatgtctctgaaaatcatttgtg 10604027  T
Q  212 tggtaacatttctgaaaccattggtgaatgcataagcttagaatatctttattttcaaggaaactc 277  Q
    |||  | ||| ||| ||| |||||||||||||||||||||||||| |||  ||| ||||| |||||    
T  10604028 tggggagattcctggaactattggtgaatgcataagcttagaataccttcgtttgcaagggaactc 10604093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 8 - 208
Target Start/End: Original strand, 10610782 - 10610982
Alignment:
Q  8 aagcataggaaactgtcaaaagttacaatccatagtcctttttcaaaataatcttagtggaaccatacccttagaggtttttagtctttcctctttatca 107  Q
    |||||||||||| |||||||||||||||| | |||  |||| ||| ||||| ||||||||| ||||||| |||||| |||||| |||||  | |||||||    
T  10610782 aagcataggaaattgtcaaaagttacaatacctagatctttctcataataaacttagtggatccatacctttagagatttttaatcttttttatttatca 10610881  T
Q  108 atattactggttttgtcaaaaaactctttcagtggcaacttaccgaaagaagtcggtatgctaacaaaaatagataccttagatgtctctgacaatcaac 207  Q
    |  ||| ||   |||||  | |||||||| ||||| | |||||| | |||||| |||||||||| ||| ||  |||   ||||||| ||||| |||||||    
T  10610882 aatttattgaacttgtcgcataactctttgagtggtagcttaccaagagaagtgggtatgctaaaaaatattaatatgctagatgtatctgagaatcaac 10610981  T
Q  208 t 208  Q
    |    
T  10610982 t 10610982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 8 - 142
Target Start/End: Complemental strand, 10661222 - 10661088
Alignment:
Q  8 aagcataggaaactgtcaaaagttacaatccatagtcctttttcaaaataatcttagtggaaccatacccttagaggtttttagtctttcctctttatca 107  Q
    |||||||||| | || |||||| |||||||| ||| |||||  ||||| | |||||| ||||||||||||  | |||| |||||||||||||||||| ||    
T  10661222 aagcataggacattgccaaaagctacaatccctagacctttcacaaaacattcttagaggaaccatacccaaaaaggtctttagtctttcctctttaaca 10661123  T
Q  108 atattactggttttgtcaaaaaactctttcagtgg 142  Q
    |  ||||||   |||||||||||||| || |||||    
T  10661122 aacttactgaacttgtcaaaaaactcattgagtgg 10661088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 52 - 280
Target Start/End: Original strand, 10558036 - 10558264
Alignment:
Q  52 aaaataatcttagtggaaccatacccttagaggtttttagtctttcctctttatcaatattactggttttgtcaaaaaactctttcagtggcaacttacc 151  Q
    |||||||| |||| |||||||||||||| |||||||||||| ||||||| |||||||  | |||||  |||||| ||||||| || ||||| ||| || |    
T  10558036 aaaataattttagaggaaccatacccttggaggtttttagtatttcctcattatcaaactcactggacttgtcacaaaactcattgagtggaaacctatc 10558135  T
Q  152 gaaagaagtcggtatgctaacaaaaatagataccttagatgtctctgacaatcaactttctggtaacatttctgaaaccattggtgaatgcataagctta 251  Q
        ||||| |||| ||||| ||| ||  |||   ||||| ||||||| ||| |  | |||||| | ||| ||  |||||||| | |||||| |||||||    
T  10558136 tgttgaagtgggtaggctaaaaaatattaataagctagatttctctgagaataatttgtctggtgaaattcctataaccattgatcaatgcaaaagctta 10558235  T
Q  252 gaatatctttattttcaaggaaactcctt 280  Q
    ||||| |||| ||| |||||||| |||||    
T  10558236 gaatacctttttttgcaaggaaattcctt 10558264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 66 - 277
Target Start/End: Complemental strand, 10653278 - 10653067
Alignment:
Q  66 ggaaccatacccttagaggtttttagtctttcctctttatcaatattactggttttgtcaaaaaactctttcagtggcaacttaccgaaagaagtcggta 165  Q
    |||||||||||| |||||||||| |||||||||||  || |||   |||||  ||||||||| ||| | || ||||| | |||||||| |||||| ||||    
T  10653278 ggaaccatacccatagaggttttaagtctttcctccctaacaaacatactgaatttgtcaaataacacattgagtggtagcttaccgagagaagtgggta 10653179  T
Q  166 tgctaacaaaaatagataccttagatgtctctgacaatcaactttctggtaacatttctgaaaccattggtgaatgcataagcttagaatatctttattt 265  Q
    |||||| ||| ||  ||   |||||| |||| || ||| | || || ||| | ||| ||  |||||||||||||||||||  ||||||||| |||| |||    
T  10653178 tgctaagaaatatcaatgagttagatatctccgataattatctatcaggtgagattcctagaaccattggtgaatgcatagtcttagaatacctttcttt 10653079  T
Q  266 tcaaggaaactc 277  Q
     ||||| |||||    
T  10653078 gcaagggaactc 10653067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 8 - 89
Target Start/End: Complemental strand, 10748152 - 10748071
Alignment:
Q  8 aagcataggaaactgtcaaaagttacaatccatagtcctttttcaaaataatcttagtggaaccatacccttagaggttttt 89  Q
    |||||||| ||| |||||||||||||||| | |||  |||| ||| ||||| ||||||||||||||||| | |||| |||||    
T  10748152 aagcatagaaaattgtcaaaagttacaatacctagatctttctcataataagcttagtggaaccataccttcagagattttt 10748071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 156 - 275
Target Start/End: Complemental strand, 10589416 - 10589297
Alignment:
Q  156 gaagtcggtatgctaacaaaaatagataccttagatgtctctgacaatcaactttctggtaacatttctgaaaccattggtgaatgcataagcttagaat 255  Q
    ||||| ||| |||||| ||| |||| |||  ||||||||||||| ||||| || || |||  |||| | | ||||||||| || ||||||| ||||||||    
T  10589416 gaagtaggtttgctaaaaaatataggtacaatagatgtctctgaaaatcatctctcaggtggcattccaggaaccattggggattgcataaacttagaat 10589317  T
Q  256 atctttattttcaaggaaac 275  Q
    | ||| |||| |||||||||    
T  10589316 accttcatttgcaaggaaac 10589297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 57; Significance: 8e-24; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 8 - 280
Target Start/End: Original strand, 12931351 - 12931623
Alignment:
Q  8 aagcataggaaactgtcaaaagttacaatccatagtcctttttcaaaataatcttagtggaaccatacccttagaggtttttagtctttcctctttatca 107  Q
    ||||||||||||||||||||| ||||||||  | |  |||| ||| ||||| ||||| |||||||||||  |||||||||| | |||||  |||||||||    
T  12931351 aagcataggaaactgtcaaaatttacaatctcttgatctttctcataataagcttagaggaaccatacctgtagaggttttaaatcttttttctttatca 12931450  T
Q  108 atattactggttttgtcaaaaaactctttcagtggcaacttaccgaaagaagtcggtatgctaacaaaaatagataccttagatgtctctgacaatcaac 207  Q
    || ||| ||   |||||| | |||||||| ||||| | |||||| | |||||| |||||| ||| ||| || ||  | |||||||||||||| ||||| |    
T  12931451 atcttattgaacttgtcacataactctttaagtggtagcttaccaagagaagtgggtatgttaaaaaatattgaagcattagatgtctctgagaatcatc 12931550  T
Q  208 tttctggtaacatttctgaaaccattggtgaatgcataagcttagaatatctttattttcaaggaaactcctt 280  Q
    | |||||| | ||| ||  |   ||||||||||| | ||||||||||||| || |||| ||| | ||||||||    
T  12931551 tatctggtgatattcctagagaaattggtgaatgtacaagcttagaatatattcatttgcaaaggaactcctt 12931623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 8 - 280
Target Start/End: Complemental strand, 17924540 - 17924268
Alignment:
Q  8 aagcataggaaactgtcaaaagttacaatccatagtcctttttcaaaataatcttagtggaaccatacccttagaggtttttagtctttcctctttatca 107  Q
    |||| |||||||||||||||| |||||||   |||  || | ||| ||||| ||||| |||||||||||  |||||||||| | |||||  |||||||||    
T  17924540 aagcttaggaaactgtcaaaatttacaatatctagatctgtctcataataagcttagaggaaccatacctgtagaggttttaaatcttttttctttatca 17924441  T
Q  108 atattactggttttgtcaaaaaactctttcagtggcaacttaccgaaagaagtcggtatgctaacaaaaatagataccttagatgtctctgacaatcaac 207  Q
    || ||| ||   |||||| | |||||||| ||||| | |||||| | ||||||  ||||| ||| ||| || ||    |||||||||||||| ||||| |    
T  17924440 atcttattgaacttgtcacataactctttgagtggtaccttaccaagagaagtgagtatgttaaaaaatattgaagaattagatgtctctgagaatcatc 17924341  T
Q  208 tttctggtaacatttctgaaaccattggtgaatgcataagcttagaatatctttattttcaaggaaactcctt 280  Q
    | |||||| | ||| |   |   ||||||||||| ||||||||||||||| || |||| ||| | ||||||||    
T  17924340 tatctggtgatattccgagagaaattggtgaatgtataagcttagaatatattcatttgcaaaggaactcctt 17924268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 8 - 94
Target Start/End: Complemental strand, 31468299 - 31468213
Alignment:
Q  8 aagcataggaaactgtcaaaagttacaatccatagtcctttttcaaaataatcttagtggaaccatacccttagaggtttttagtct 94  Q
    ||||||||||||||| ||||||||| |   | ||| |||||  ||||| |||||||| |||||||||||  ||||||||||||||||    
T  31468299 aagcataggaaactgccaaaagttatatcacttagacctttcgcaaaacaatcttagaggaaccataccgatagaggtttttagtct 31468213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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