View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18187_high_1 (Length: 515)
Name: NF18187_high_1
Description: NF18187
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18187_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 360; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 19 - 427
Target Start/End: Original strand, 37189900 - 37190308
Alignment:
| Q |
19 |
aacgtgccggtattggattcagtagcatgaaaagcttaaacaaaaggagttgaaattaaagcaagtttaccttgattcaggagatgatctccagctccaa |
118 |
Q |
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| T |
37189900 |
aacgtgccggtattggattgagtagcatgataagcttaaacaaaaggagttgaaattaaagcaagtttaccttgattcaggagatggtctccagctccaa |
37189999 |
T |
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| Q |
119 |
tacaatggatcattactccatgttattgacaattctcttgcagataggatataagnnnnnnnacccgaatacttgtccaatttaaagctctacataacat |
218 |
Q |
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| T |
37190000 |
tacaatggatcattactccatgttattgacaattctcttgcagataggatataagtttttttacccgaatacttgtccaatttaaagctctacataacat |
37190099 |
T |
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| Q |
219 |
tacattgaaaaaacaatcaattgttggaaattggaaccaccacagaaattatggtgaactactgtgattttgcaagagctacatatactttgggcaaaat |
318 |
Q |
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| T |
37190100 |
tacataaaaaaaacaatcaattgttggaaattggaaccaccacagaaattatggtgaactactgtgattttgcaagaactacatatactttgggcaaaat |
37190199 |
T |
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| Q |
319 |
tgtgatggctaaccatgattctgtcaaaccatgaattactgtaattgaaattatatcagaggtggattctacttactatgtggcccctgtctaggagcag |
418 |
Q |
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| T |
37190200 |
tgtgatggctaaccatgattctgtcaaaccatgaattgctgtaattgaaattatatcagaggtggattctacttactatgtggcccctgtctaggagcag |
37190299 |
T |
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| Q |
419 |
aggttgttg |
427 |
Q |
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| T |
37190300 |
aggttgttg |
37190308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 475 - 505
Target Start/End: Original strand, 37190356 - 37190386
Alignment:
| Q |
475 |
tgaggggattgagggttcttgagatgatgtc |
505 |
Q |
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| T |
37190356 |
tgaggggattgagggttcttgagatgatgtc |
37190386 |
T |
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