View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18187_high_10 (Length: 325)
Name: NF18187_high_10
Description: NF18187
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18187_high_10 |
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Alignment Details
Target: chr1 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 15 - 309
Target Start/End: Original strand, 812865 - 813159
Alignment:
| Q |
15 |
atgaaaaacacaaaaatgaaattgtaagtttgaaacccacaaatcattcatnnnnnnntcaaataaattgagatttgacaagatcaaaacacaacccaat |
114 |
Q |
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| T |
812865 |
atgaaaaacacaaaaatcaaattgtaagtttgaaacccacaaatcattgataaaaaaatcaaataaattgagatttgacaagatgaaaacacaacccaat |
812964 |
T |
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| Q |
115 |
taaacatgttgaagatatgaaaaagaaatgaagttaaccctgttctactactccattgcataacataacatgattataaatttgtgccatnnnnnnntca |
214 |
Q |
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| T |
812965 |
taaacatgttgaagatatgaaaaagaaatgaagctaaccctgttctactactccattgcgtcacataacatgattataaatttgtgtcataaaaaaatca |
813064 |
T |
|
| Q |
215 |
aactttttctttgacaaactacatataaaccttcaaattcagaataaatatttcttcgtcctgcatgtgtaaactgttcccattcatcatgttac |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| |
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| T |
813065 |
aactttttctttgacaaactacatataaaccttcaaattcagaataaatatttcttggtcctggatgtgtaaactgttcccattcatcatgttac |
813159 |
T |
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