View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18187_high_11 (Length: 321)
Name: NF18187_high_11
Description: NF18187
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18187_high_11 |
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Alignment Details
Target: chr3 (Bit Score: 186; Significance: 1e-101; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 99 - 304
Target Start/End: Original strand, 25254532 - 25254737
Alignment:
| Q |
99 |
tacatatatttcataaaggaagcatttatgtgaaggtaataatttttatttatgaggattctaaccttactaagccatatgcaaaaccaaactgttccta |
198 |
Q |
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| T |
25254532 |
tacatatatttcgtaaaggaagcatttatgtgaaggtaataatttttatgtatgcgaattctaaccttactaagccatatacaaaaccaaactgttccta |
25254631 |
T |
|
| Q |
199 |
gagaaccaaaggagtaaaacaccgatggccatccatactgatgaattaggaaaggtgaaaaggccaatccagtgaccgatccaaggtacatgccactgta |
298 |
Q |
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| T |
25254632 |
gagaaccaaaggagtaaaacaccgatggccatccatactgatgaattaggaaaggtgaaaaggccaatccagtgaccgatccaaggtacatgccactgta |
25254731 |
T |
|
| Q |
299 |
taccag |
304 |
Q |
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|||||| |
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| T |
25254732 |
taccag |
25254737 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 25254435 - 25254468
Alignment:
| Q |
1 |
tcatcaagtggtgaactatgtgcctacaggtccc |
34 |
Q |
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| T |
25254435 |
tcatcaagtggcgaactatgtgcctacaggtccc |
25254468 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 204 - 306
Target Start/End: Original strand, 11319736 - 11319838
Alignment:
| Q |
204 |
ccaaaggagtaaaacaccgatggccatccatactgatgaattaggaaaggtgaaaaggccaatccagtgaccgatccaaggtacatgccactgtatacca |
303 |
Q |
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||||| ||||| ||||| |||||||||||| | | || ||||||||||| || || |||| || ||||| || ||||||||||||||||| ||||| | |
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| T |
11319736 |
ccaaatgagtagaacacagatggccatccaaatttttggattaggaaaggcgagaatcccaagcctgtgacagaaccaaggtacatgccactatatacta |
11319835 |
T |
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| Q |
304 |
gtg |
306 |
Q |
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||| |
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| T |
11319836 |
gtg |
11319838 |
T |
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