View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18187_high_13 (Length: 297)
Name: NF18187_high_13
Description: NF18187
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18187_high_13 |
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Alignment Details
Target: chr1 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 13 - 280
Target Start/End: Complemental strand, 26437531 - 26437271
Alignment:
| Q |
13 |
tgaatatgtgtaaatagtcacatggctcacattgcatcacatgcatggtcgggctttagaggatgattgtggatttgagttgttgaaccgacatttgatt |
112 |
Q |
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| T |
26437531 |
tgaatatgtgtaaatagtcacatggctcacattgcgtcacatgcatggtcgggctttagaggatgattgtggatttgagttgttgaaccaacatttgatt |
26437432 |
T |
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| Q |
113 |
tgttccatttggaccgctatgtcaagcaacggtcttcaacaatgtaaaactttcagaagtttctttgtaaatatttgaattt--gaagcctccatggacc |
210 |
Q |
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| T |
26437431 |
tgttccatttggaccgctatgtcaagcaatggtcttcaacaatgtaaaac---------tttctttgtaaatatttgaatttgagaagcctccatggacc |
26437341 |
T |
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| Q |
211 |
aaactctcttaaattttactaaaaccttagctatacagtttttatcaataactaatatggatctcactcc |
280 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26437340 |
aaactctcttaaattttactaaaaccttagctatacagtttttatcaataactaatatggatctcactcc |
26437271 |
T |
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