View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18187_high_14 (Length: 259)
Name: NF18187_high_14
Description: NF18187
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18187_high_14 |
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Alignment Details
Target: chr5 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 27567938 - 27568178
Alignment:
| Q |
1 |
cagctttagcctttatcattgtcatttgctgtattaaaatagaaaacttaaaatgttaatgcgacggttgggacatttacctactaaagagtacataaat |
100 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
27567938 |
cagcttgagcctttatcattgtcatttgctgtattaaaatagaaaacttaaaatgttaatgagacggttgggacatttacctactaaagagtacataaat |
27568037 |
T |
|
| Q |
101 |
tgatcaattactaggactcaatattcgataaaaagcaattatactctatctttttaaatgacaaaagttcaaaatataacaacagcatgtatgacgcggt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
27568038 |
tgatcaattactaggactcaatattcgataaaaagcaattatactctatctttttaaatgaaaaaagttcaaaatataacaacagcatgtatgacgcggt |
27568137 |
T |
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| Q |
201 |
tttccttttcttcaaactcttaagacccgtaacataatagt |
241 |
Q |
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|||||||| |||||||||||||||||||||||||||||||| |
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| T |
27568138 |
tttcctttccttcaaactcttaagacccgtaacataatagt |
27568178 |
T |
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