View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18187_high_3 (Length: 430)
Name: NF18187_high_3
Description: NF18187
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18187_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 374; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 13 - 414
Target Start/End: Original strand, 34223495 - 34223895
Alignment:
| Q |
13 |
aacctgtgaatagaattgttccctttcctctttcaaccattcccggcagcacctaattcataaattattatttagcttcatagaaacatttgatatgttg |
112 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||| |
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| T |
34223495 |
aaccagtgaatagaattgttccctttcctctttcaaccattcccggcagcacctaattcataa-tcattatttagcttcatagaaacatttgatatgttg |
34223593 |
T |
|
| Q |
113 |
gatcgcagagcagacgaactacctgttgagcgcagttgaaggcaccgagggatgaaacagctagggaagtttggaaagtttggattgggagatgttgaaa |
212 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34223594 |
gatcgcagagtagacgaactacctgttgagcgcagttgaaggcaccgagggatgaaacagctagggaagtttggaaagtttggattgggagatgttgaaa |
34223693 |
T |
|
| Q |
213 |
aggagttggtttggattgaagaggtgactcataattagcattataaacaagaacttcaacaaatccaagtgaaagtacaccttcaaatgcttctcttaca |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34223694 |
aggagttggtttggattgaagaggtgactcataattagcattataaacaagaacttcaacaaatccaagtgaaagtacaccttcaaatgcttctcttaca |
34223793 |
T |
|
| Q |
313 |
cttcttgaatctgaacaatcaattcttattgcaaacacctgtgccttttcttcccttgctatttcatccgcaaatcttgataacctccctgcatcacatc |
412 |
Q |
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||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34223794 |
cttcttgaatctgaacaatcaattcttatagcaaacacttgtgccttttcttcccttgctatttcatccgcaaatcttgataacctccctgcatcacatc |
34223893 |
T |
|
| Q |
413 |
ac |
414 |
Q |
| |
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|| |
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| T |
34223894 |
ac |
34223895 |
T |
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