View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18187_high_4 (Length: 381)
Name: NF18187_high_4
Description: NF18187
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18187_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 328; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 11 - 367
Target Start/End: Complemental strand, 32505471 - 32505111
Alignment:
| Q |
11 |
cataggtaaggggaatttgttgtttaattatgttcggatgaacactaataaatgaaaacatg----tcatggtcccatgaccccatgaatgaaaaacttt |
106 |
Q |
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| T |
32505471 |
cataggtaaggggaatttgttgtttaattatgttgggatgaacactaataaatgaaaacatgcatgtcatggtcccatgaccccatgaatgaaaaacttt |
32505372 |
T |
|
| Q |
107 |
gttggcaattgggcagtgaaggttagcagtacacgtaaatgtacagagagaaacaaaatcaatgtcttgtcgagtcgtaagcagaactcatacgtaccac |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
32505371 |
gttggcaattgggcagtgaaggttagcagtacacgtaaatgtacagagagaaacaaaatcaatgtcttgtcgagtcctaagcagaactcatacgtaccac |
32505272 |
T |
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| Q |
207 |
ccttcaaatgtcatctgccccacccaattgtcaaaccattcacattgttcttgatcttagcacaattaaagtaattcagctatgaaattttttaaccatt |
306 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
32505271 |
ccttcaaatgtcatctgccccacccaattgtcaaaccattcacattgttcttgatcttagcacaattaaagtaattcagctttgaaattttttaaccatt |
32505172 |
T |
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| Q |
307 |
gaggaatcatgcatgataaagggaagggtaatagcaatttaatgagatgagctgtatgata |
367 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
32505171 |
gaggaatcatgcatgataaagagaagggtaatagcaatttaatgagatgagctgtatgata |
32505111 |
T |
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