View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18187_low_10 (Length: 339)
Name: NF18187_low_10
Description: NF18187
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18187_low_10 |
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Alignment Details
Target: chr8 (Bit Score: 306; Significance: 1e-172; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 15 - 332
Target Start/End: Complemental strand, 6935617 - 6935300
Alignment:
| Q |
15 |
agaaattacaccttaaagcaatgtgcaactgacactaatgcacagatataccatgaaagatataacagccaataactttaggtttccaataaagatgtgc |
114 |
Q |
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| T |
6935617 |
agaaattacaccctaaagcaatgtgcaactgacactaatgcacagatataccatgaaagatataacagccaataacttcaggtttccaataaagatgtgc |
6935518 |
T |
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| Q |
115 |
ctatcatttattatctcagtatccttcctcaagttgaagcaatatagatgactatcatgccaagcttggatataaatgagttgaattttggagaagccaa |
214 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6935517 |
ctattatttattatctcagtatccttcctcaagttgaagcaatatagatgactatcatgccaagcttggatataaatgagttgaattttggagaagccaa |
6935418 |
T |
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| Q |
215 |
agcgttggtgagaaaatttgctaactgctcctgtgatgaaattggtaaaagtctaagagtgccatcttgaaccttctcccttactagatgacaatctatt |
314 |
Q |
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| T |
6935417 |
agcgttggtgagaaaatttgctaactgctcctgtgatgaaattggtaaaagtctaagagtgccatcttgaaccttctcccttactagatgacaatctatt |
6935318 |
T |
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| Q |
315 |
ttaaggtgctttcttctc |
332 |
Q |
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| T |
6935317 |
ttaaggtgctttcttctc |
6935300 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 145; Significance: 3e-76; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 120 - 332
Target Start/End: Original strand, 18431934 - 18432146
Alignment:
| Q |
120 |
atttattatctcagtatccttcctcaagttgaagcaatatagatgactatcatgccaagcttggatataaatgagttgaattttggagaagccaaagcgt |
219 |
Q |
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| T |
18431934 |
atttactagctcaatatcctccctcaagctgaagcattatagatgtctatcatgccaagcttggatataaatgagttgaattttggaggggccaaagcct |
18432033 |
T |
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| Q |
220 |
tggtgagaaaatttgctaactgctcctgtgatgaaattggtaaaagtctaagagtgccatcttgaaccttctcccttactagatgacaatctattttaag |
319 |
Q |
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| T |
18432034 |
ttgtgagaaaatctgctaactgctcttgtgatgaaattggtaaaagtctaagagtaccatcttgaaccttttcccttactagatgacaatctatttcaag |
18432133 |
T |
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| Q |
320 |
gtgctttcttctc |
332 |
Q |
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||||||| ||||| |
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| T |
18432134 |
gtgctttgttctc |
18432146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 132; Significance: 2e-68; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 141 - 332
Target Start/End: Complemental strand, 30156075 - 30155884
Alignment:
| Q |
141 |
cctcaagttgaagcaatatagatgactatcatgccaagcttggatataaatgagttgaattttggagaagccaaagcgttggtgagaaaatttgctaact |
240 |
Q |
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||||||| ||||||| |||||||| ||||||||| |||||||||||||||||||||||||||||||| |||||||| || |||||||||| |||||||| |
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| T |
30156075 |
cctcaagctgaagcattatagatgtctatcatgctaagcttggatataaatgagttgaattttggaggggccaaagcctttgtgagaaaatctgctaact |
30155976 |
T |
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| Q |
241 |
gctcctgtgatgaaattggtaaaagtctaagagtgccatcttgaaccttctcccttactagatgacaatctattttaaggtgctttcttctc |
332 |
Q |
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|||| |||||||||||| |||||||||||||||| |||||||||||||| ||||||||||||||||||||||||| |||||||||| ||||| |
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| T |
30155975 |
gctcttgtgatgaaattcgtaaaagtctaagagtaccatcttgaaccttttcccttactagatgacaatctatttcaaggtgctttgttctc |
30155884 |
T |
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