View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18187_low_18 (Length: 256)
Name: NF18187_low_18
Description: NF18187
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18187_low_18 |
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Alignment Details
Target: chr7 (Bit Score: 200; Significance: 1e-109; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 3 - 238
Target Start/End: Original strand, 7713454 - 7713689
Alignment:
| Q |
3 |
aggagcagcacagaggcatttattatgctcaaacgaactctttgcaaacttgctcaacccagtagggatcgcaccacacagctggttaaagctgacattg |
102 |
Q |
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||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||| |
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| T |
7713454 |
aggagcatcacaaaggcatttattatgctcaaacgaactctttgcaaacttgctcaacccagtagggatcgcaccacagagctggttaaagctaacattg |
7713553 |
T |
|
| Q |
103 |
aacttcgaaagagactgtaggttgccgagcgacgccggaatagcaccggataacttgttgttagacaaatcaacctcttggaggcgcttcaacttgccca |
202 |
Q |
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|||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
7713554 |
aactgcgaaagagactgtaggttgtcgagcgacgccggaatagcaccggataacttgttgttggacaaatcaacctcttggaggcgcttcaacttgccca |
7713653 |
T |
|
| Q |
203 |
gaaaagcagggattggcccactaaggctgttggagc |
238 |
Q |
| |
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|||| |||||||||||||||||||||||||||||| |
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| T |
7713654 |
gaaattcagggattggcccactaaggctgttggagc |
7713689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 3 - 236
Target Start/End: Original strand, 7731131 - 7731364
Alignment:
| Q |
3 |
aggagcagcacagaggcatttattatgctcaaacgaactctttgcaaacttgctcaacccagtagggatcgcaccacacagctggttaaagctgacattg |
102 |
Q |
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| T |
7731131 |
aggagcaccacaaaggcatttattatgatcaaacgaactctttgcaaacttgctcaatccagtagggatagcaccacacagttggttaaagctgacatta |
7731230 |
T |
|
| Q |
103 |
aacttcgaaagagactgtaggttgccgagcgacgccggaatagcaccggataacttgttgttagacaaatcaacctcttggaggcgcttcaacttgccca |
202 |
Q |
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| T |
7731231 |
aactgcgaaagagacggtatggagccgaacgacgccggaataacaccggataactggttgttagacaaatcaaactcctgtaagcccttcaactggccta |
7731330 |
T |
|
| Q |
203 |
gaaaagcagggattggcccactaaggctgttgga |
236 |
Q |
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|||||| ||||| ||||||||||| |||||||| |
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| T |
7731331 |
gaaaagtggggatcggcccactaagactgttgga |
7731364 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 3 - 236
Target Start/End: Original strand, 7726971 - 7727204
Alignment:
| Q |
3 |
aggagcagcacagaggcatttattatgctcaaacgaactctttgcaaacttgctcaacccagtagggatcgcaccacacagctggttaaagctgacattg |
102 |
Q |
| |
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||||||| |||| |||||||||||||| |||||||||||||||||||||||| ||||||||||||| |||||||||||||| ||||||||||||||||| |
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| T |
7726971 |
aggagcaccacaaaggcatttattatgatcaaacgaactctttgcaaacttgttcaacccagtaggtatcgcaccacacagttggttaaagctgacatta |
7727070 |
T |
|
| Q |
103 |
aacttcgaaagagactgtaggttgccgagcgacgccggaatagcaccggataacttgttgttagacaaatcaacctcttggaggcgcttcaacttgccca |
202 |
Q |
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|||| |||||||||| ||| | ||||| |||||| |||||| |||||||||||| ||||||||||||||||| ||| || | || |||||||| ||| | |
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| T |
7727071 |
aactgcgaaagagacggtatggagccgaacgacgcgggaataacaccggataactggttgttagacaaatcaaactcctgtaagcccttcaactggccta |
7727170 |
T |
|
| Q |
203 |
gaaaagcagggattggcccactaaggctgttgga |
236 |
Q |
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|||||| ||||| ||||||||||| |||||||| |
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| T |
7727171 |
gaaaagtggggatcggcccactaagactgttgga |
7727204 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 3 - 236
Target Start/End: Original strand, 7699109 - 7699342
Alignment:
| Q |
3 |
aggagcagcacagaggcatttattatgctcaaacgaactctttgcaaacttgctcaacccagtagggatcgcaccacacagctggttaaagctgacattg |
102 |
Q |
| |
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||||||| |||| ||||||||||||||||||||| | |||| |||||| ||||||||| ||| || |||||||| |||||||||||||| ||||| |
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| T |
7699109 |
aggagcaccacaaaggcatttattatgctcaaacacattcttgttaaacttcttcaacccagcaggaattgcaccacagagctggttaaagctaacatta |
7699208 |
T |
|
| Q |
103 |
aacttcgaaagagactgtaggttgccgagcgacgccggaatagcaccggataacttgttgttagacaaatcaacctcttggaggcgcttcaacttgccca |
202 |
Q |
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|||| ||||||||| |||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||| | ||||||||||||||||| | |
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| T |
7699209 |
aactgcgaaagagattgtaggttgccgagtgacgccggaatagtgccggataacttgttgttagacaaatcaacctcctttaggcgcttcaacttgccta |
7699308 |
T |
|
| Q |
203 |
gaaaagcagggattggcccactaaggctgttgga |
236 |
Q |
| |
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|||| | |||||||||||||||||||||||||| |
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| T |
7699309 |
gaaaggaggggattggcccactaaggctgttgga |
7699342 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 3 - 236
Target Start/End: Original strand, 7739289 - 7739522
Alignment:
| Q |
3 |
aggagcagcacagaggcatttattatgctcaaacgaactctttgcaaacttgctcaacccagtagggatcgcaccacacagctggttaaagctgacattg |
102 |
Q |
| |
|
||||||| |||| |||||||||||||| |||||||||||||||||||| |||||||| ||||||||||| ||||||||||| |||||||||||||| || |
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| T |
7739289 |
aggagcaccacaaaggcatttattatgatcaaacgaactctttgcaaatttgctcaatccagtagggatagcaccacacagttggttaaagctgacgtta |
7739388 |
T |
|
| Q |
103 |
aacttcgaaagagactgtaggttgccgagcgacgccggaatagcaccggataacttgttgttagacaaatcaacctcttggaggcgcttcaacttgccca |
202 |
Q |
| |
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|||| ||||||||| ||||| ||||| ||||||||||||| |||||| |||||| |||||||||||||||| ||| || | || |||||||| ||| | |
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| T |
7739389 |
aactgggaaagagacggtagggagccgaacgacgccggaataacaccggttaacttattgttagacaaatcaaactcctgtaagcccttcaactggccta |
7739488 |
T |
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| Q |
203 |
gaaaagcagggattggcccactaaggctgttgga |
236 |
Q |
| |
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| |||| ||||| | ||||||||| |||||||| |
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| T |
7739489 |
ggaaagtggggatcgacccactaagactgttgga |
7739522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 91; Significance: 3e-44; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 11 - 237
Target Start/End: Complemental strand, 12908357 - 12908131
Alignment:
| Q |
11 |
cacagaggcatttattatgctcaaacgaactctttgcaaacttgctcaacccagtagggatcgcaccacacagctggttaaagctgacattgaacttcga |
110 |
Q |
| |
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|||| ||||||||||||||||||||| |||||| | ||||| ||||||||||||| |||||||||||||| |||||| |||| ||||| |||| || |
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| T |
12908357 |
cacaaaggcatttattatgctcaaacatactcttctccaacttcttcaacccagtaggtatcgcaccacacagatggttagagctaacattcaactggga |
12908258 |
T |
|
| Q |
111 |
aagagactgtaggttgccgagcgacgccggaatagcaccggataacttgttgttagacaaatcaacctcttggaggcgcttcaacttgcccagaaaagca |
210 |
Q |
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|||||| ||||| || |||||||||| |||||| |||||||||||||||||||||||||||||||||||| | |||||||||| ||| || || | |
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| T |
12908257 |
gagagacggtagggtggcgagcgacgctggaataacaccggataacttgttgttagacaaatcaacctcttctaagcgcttcaaccggcctaggaaggtg |
12908158 |
T |
|
| Q |
211 |
gggattggcccactaaggctgttggag |
237 |
Q |
| |
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||||| || ||||||||| |||||||| |
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|
| T |
12908157 |
gggatcgggccactaaggttgttggag |
12908131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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