View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18187_low_19 (Length: 253)
Name: NF18187_low_19
Description: NF18187
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18187_low_19 |
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| [»] chr2 (5 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 180; Significance: 3e-97; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 3 - 253
Target Start/End: Complemental strand, 35106041 - 35105790
Alignment:
| Q |
3 |
gatcatctttatgctcatctaaaaagaaagggtatttttgccttcaaggatgatcaaaggcttgagaaaggagaatccctttcaccgcaacttctacaag |
102 |
Q |
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| T |
35106041 |
gatcatctttatgctcatctaaaaagaaagggtatttttgccttcaaggatgatcaaaggcttgagaaaggagaatccctttcgccgcaacttcttcaag |
35105942 |
T |
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| Q |
103 |
caattcaaagttcaagaatttctattgttgtcttctctcaaagatatgccgattcaacgtggtgtttggaagagatggctactattgctgaatgccatga |
202 |
Q |
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| T |
35105941 |
caattcaaaattctcgggtttctattgttgtcttctctgaaagatatgccgagtcaacatggtgtttggaagagatggctactgttgctgaatgccgtaa |
35105842 |
T |
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| Q |
203 |
aaaattgaaacaaactgttttccctggtttttatgatgatg-tccatctcat |
253 |
Q |
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| T |
35105841 |
aagattgaaacaaactgttttccctgttttttatgatgttgatccatctcat |
35105790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 35055130 - 35054891
Alignment:
| Q |
1 |
ttgatcatctttatgctcatctaaaaagaaagggtatttttgccttcaaggatgatcaaaggcttgagaaaggagaatccctttcaccgcaacttctaca |
100 |
Q |
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| T |
35055130 |
ttgatcatctttatgctcatctaacaagaaaaggtatttttgccttcaaggatgacaaaagtcttgagaaaggagaatttatttcaccgcagcttctaca |
35055031 |
T |
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| Q |
101 |
agcaattcaaagttcaagaatttctattgttgtcttctctcaaagatatgccgattcaacgtggtgtttggaagagatggctactattgctgaatgccat |
200 |
Q |
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| T |
35055030 |
agcaattcgaaattcgcgaatttttattgttgtcttctctaaaacatatgccgaatcaacttggtgtttggaagagatggctgcaattgctgattgttgt |
35054931 |
T |
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| Q |
201 |
gaaaaattgaaacaaactgttttccctggtttttatgatg |
240 |
Q |
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| T |
35054930 |
gagtatttcaaacaaacagttttccctattttttatgatg |
35054891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 35183992 - 35183753
Alignment:
| Q |
1 |
ttgatcatctttatgctcatctaaaaagaaagggtatttttgccttcaaggatgatcaaaggcttgagaaaggagaatccctttcaccgcaacttctaca |
100 |
Q |
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| T |
35183992 |
ttgatcatcttcatgctcatctaacaactaagggtattttcgctttcaaggatgacaaaagacttgaaaaaggagaatccctttcgccgcaacttctaca |
35183893 |
T |
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| Q |
101 |
agcaattcaaagttcaagaatttctattgttgtcttctctcaaagatatgccgattcaacgtggtgtttggaagagatggctactattgctgaatgccat |
200 |
Q |
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| T |
35183892 |
agcaattcaaagttctcggatttctattgttgtcttctctaaaaattatgcggagtcaacattatgtttggaagagatggccactattgctgaatatcat |
35183793 |
T |
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| Q |
201 |
gaaaaattgaaacaaactgttttccctggtttttatgatg |
240 |
Q |
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| T |
35183792 |
acagaattgaaacagactgttttccctattttttatgatg |
35183753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 35177994 - 35177756
Alignment:
| Q |
1 |
ttgatcatctttatgctcatctaaaaagaaagggtatttttgccttcaaggatgatcaaaggcttgagaaaggagaatccctttcaccgcaacttctaca |
100 |
Q |
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|||||||||||||||||||||||| |||||| ||||||||||| |||||||||||| ||||||| ||||||||||||| |||||| | |||||||| ||| |
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| T |
35177994 |
ttgatcatctttatgctcatctaacaagaaaaggtatttttgcgttcaaggatgataaaaggctcgagaaaggagaatgcctttcgctgcaacttcgaca |
35177895 |
T |
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| Q |
101 |
agcaattcaaagttcaagaatttctattgttgtcttctctcaaagatatgccgattcaacgtggtgtttggaagagatggctactattgctgaatgccat |
200 |
Q |
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| T |
35177894 |
agcaattgcaaattcacggatatctatcgttgtcttctcagaaagatatgctgagtcaacatggtgtttggaagaaatggctactattgttgaatgtcgt |
35177795 |
T |
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| Q |
201 |
gaaaaattgaaacaaactgttttccctggtttttatgat |
239 |
Q |
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| T |
35177794 |
agcaatttcttacaaactgttttccctgttttttatgat |
35177756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 1 - 194
Target Start/End: Complemental strand, 35169703 - 35169510
Alignment:
| Q |
1 |
ttgatcatctttatgctcatctaaaaagaaagggtatttttgccttcaaggatgatcaaaggcttgagaaaggagaatccctttcaccgcaacttctaca |
100 |
Q |
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|||||||||||||||||||||||| ||||||||| |||| ||||||||||||||| ||||||| ||||||||||||| | ||||| |||||| || ||| |
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| T |
35169703 |
ttgatcatctttatgctcatctaactagaaagggtgttttcgccttcaaggatgataaaaggctagagaaaggagaatgcttttcaacgcaacatcgaca |
35169604 |
T |
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| Q |
101 |
agcaattcaaagttcaagaatttctattgttgtcttctctcaaagatatgccgattcaacgtggtgtttggaagagatggctactattgctgaa |
194 |
Q |
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||||||| || |||| | |||||||||||||||||||| |||||||||| || ||||| |||||||||||||| |||||||| |||| |||| |
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| T |
35169603 |
agcaattacaaattcacggatttctattgttgtcttctcagaaagatatgctgagtcaacatggtgtttggaagaaatggctaccattgttgaa |
35169510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 188
Target Start/End: Original strand, 25484327 - 25484514
Alignment:
| Q |
1 |
ttgatcatctttatgctcatctaaaaagaaagggtatttttgccttcaaggatgatcaaaggcttgagaaaggagaatccctttcaccgcaacttctaca |
100 |
Q |
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|||| ||||| || |||||||| || ||||| |||||||| ||||||||||||| | ||| ||||||||||| || ||||||| ||||||||||| |
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| T |
25484327 |
ttgaccatctctacgctcatctcaatagaaaaggtattttcaccttcaaggatgacaagcagctacagaaaggagaagccatttcaccccaacttctaca |
25484426 |
T |
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| Q |
101 |
agcaattcaaagttcaagaatttctattgttgtcttctctcaaaga-tatgccgattcaacgtggtgtttggaagagatggctactatt |
188 |
Q |
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| T |
25484427 |
agcaattcaacagtcacgcatttctatcgttgttttctc-caaagattatgcttcttcaacatggtgtttggatgaaatggctgctatt |
25484514 |
T |
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