View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18187_low_2 (Length: 490)
Name: NF18187_low_2
Description: NF18187
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18187_low_2 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 257; Significance: 1e-143; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 137 - 480
Target Start/End: Original strand, 36346220 - 36346570
Alignment:
| Q |
137 |
atttgatcaaatagtttaacgttaaaaattcatctctttaaataaatatatggaaaatttgatattcgaacttcaactactacatattataacgtct--- |
233 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| |||||||||| ||||||||||||||| |
|
|
| T |
36346220 |
atttgatcaaatagtttaacgttaaaaattcatctctttagataaatatatgaaaaatttgatattcgaatttcaactactgcatattataacgtctctg |
36346319 |
T |
|
| Q |
234 |
----atgaactatgtttacgtgacgtccaacatctagttttaatgacatcaattaatttactatacccaaccacaataaccatcgttataggttttacgg |
329 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36346320 |
tcaaatgaactatgttcacgtgacgtccaacatctagttttaatgacatcaattaatttactatacccaaccacaataaccatcgttataggttttacgg |
36346419 |
T |
|
| Q |
330 |
gtgacacatcttaattgcagctgaagtaataaaatattttgttttgagttgtcttgttgttgtgtagatacaactcacgnnnnnnnnnnnnttaccaaga |
429 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||| ||||||||| |
|
|
| T |
36346420 |
gtgacacatcttaattgcagctgaagtaataaaatattttgttttgagttttcttgttgtgttgtagatacaactcacgaaaaaacaaaaattaccaaga |
36346519 |
T |
|
| Q |
430 |
ctacagttttgtggtcaaaaagtaaaattgatgattcaccttcgccctatg |
480 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36346520 |
ctacagttttgtggtcaaaaagtaaaattgatgattcaccttcgccctatg |
36346570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 84 - 121
Target Start/End: Original strand, 36346151 - 36346188
Alignment:
| Q |
84 |
atagtgtacaagacagtattttgacatccttggacaca |
121 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
36346151 |
atagtgtacaagacggtattttgacatccttggacaca |
36346188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 37 - 70
Target Start/End: Original strand, 36346098 - 36346131
Alignment:
| Q |
37 |
ctttctttggtcaacaattcgcaagattcaattc |
70 |
Q |
| |
|
||||||||||||||||||||| |||||||||||| |
|
|
| T |
36346098 |
ctttctttggtcaacaattcgaaagattcaattc |
36346131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University