View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18187_low_20 (Length: 240)
Name: NF18187_low_20
Description: NF18187
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18187_low_20 |
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Alignment Details
Target: chr3 (Bit Score: 173; Significance: 4e-93; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 12 - 200
Target Start/End: Original strand, 25359793 - 25359981
Alignment:
| Q |
12 |
cgaagaatatagaaaaaatcattcacatttcacaccctcaattaatcccataaccccaaatttctttgtttcataccctaatctctgaaattgctagaca |
111 |
Q |
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| T |
25359793 |
cgaacaatatagaaaaaatcattcacatttcacaccctcaattaatcccataaccccaaatttctttgtttcataccctaatctctgaaattgctagaca |
25359892 |
T |
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| Q |
112 |
tgcataaagaaaggaattaaattagaatataaatgaaatgaaattattaggaagttgacttggcataaacacacaacattaaacaaaaa |
200 |
Q |
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| T |
25359893 |
tgcataaagaaaggaattaaattagaaaataaatgaaatgaaactattaggaagttgacttggcataaacacacaacatgaaacaaaaa |
25359981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 24 - 221
Target Start/End: Original strand, 25360771 - 25360964
Alignment:
| Q |
24 |
aaaaaatcattcacatttcacaccctcaattaatcccataaccccaaatttctttgtttcataccctaatctctgaaattgctagacatgcataaagaaa |
123 |
Q |
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| T |
25360771 |
aaaaaatcattcacatttcacacccttaattgatcccaaaaccccaaatttctctatttcataccctaa--tctaaaattgatagacatgcatgaagaaa |
25360868 |
T |
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| Q |
124 |
ggaattaaattagaatataaatgaaatgaaattattaggaagttgacttggcataaacacacaacattaaacaaaaatgttaaatatagaattcttgg |
221 |
Q |
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| T |
25360869 |
ggaatcaaattagaatatgaacgaaataaaact-ttagtaa-ttggcttggcttaaacacacaacatgaaacaaaaatgttgaatatagaactcttgg |
25360964 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 67 - 133
Target Start/End: Original strand, 25363013 - 25363079
Alignment:
| Q |
67 |
ccaaatttctttgtttcataccctaatctctgaaattgctagacatgcataaagaaaggaattaaat |
133 |
Q |
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| T |
25363013 |
ccaaatttctttatttcacaccgtaatctctgaagttggtagacatgcatgaagaaaggaatcaaat |
25363079 |
T |
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