View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18187_low_6 (Length: 380)
Name: NF18187_low_6
Description: NF18187
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18187_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 344; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 11 - 362
Target Start/End: Complemental strand, 51680007 - 51679657
Alignment:
| Q |
11 |
cacagagaaataacaaatgcttacaaacgagtcttaaaagcaaaaactaagtcataaaataatatgtactatatagttgccaaatatctaccatatacaa |
110 |
Q |
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| T |
51680007 |
cacagagaaataacaaatgcttacaaacgagtcttaaaagcaaaaac-aagtcataaaataatatgtactatatagttgccaaatatctaccatatacaa |
51679909 |
T |
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| Q |
111 |
ggtgagaggcaacattgctaagagatagagagacaaaaattaattaattaatatatacttggagtatttatttattccaaaataaataaatatggttgat |
210 |
Q |
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| T |
51679908 |
ggtgagaggcaacattgctaagagatagagagacaaaaattaattaattaatatatacttggagtatttatttattccaaaataaataaatatggttgat |
51679809 |
T |
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| Q |
211 |
ccaattttgagtgaattaagggttgaaaaagtagtccccacatttgcacttccaacttataggtttgtagtttgaaagaccatcccctcttgatgaataa |
310 |
Q |
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| T |
51679808 |
ccaattttgagtgaattaagggttgaaaaagtagtccccacatttgcacttccaacttataggtttgtagtttgaaagaccatcccctcttgatgaataa |
51679709 |
T |
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| Q |
311 |
gctgctgaatcataatggcttctatggatttgaactttagatggtacaatag |
362 |
Q |
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| T |
51679708 |
gctgctgaatcataatggcttctatggatttgaactttagatggtacaatag |
51679657 |
T |
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