View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18188_high_1 (Length: 403)
Name: NF18188_high_1
Description: NF18188
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18188_high_1 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 322; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 7 - 392
Target Start/End: Complemental strand, 13738356 - 13737968
Alignment:
| Q |
7 |
ggacatcatcaaatttctaaatcccctatttttgcattgattttggtgtaagattgcatcttactctgtaatatttcttttgagtggagaaatgtatgat |
106 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13738356 |
ggacctcatcaaatttctaaatcccctatttttgcattgattttggtgtaagattgtatcttactctgtaatatttcttttgagtggagaaatgtatgat |
13738257 |
T |
|
| Q |
107 |
ttttggattattgtgcatggtgatatgtgtggtgcatgattgcatcttacttttgttaaaaatgaactgcaaaattggagaaaggcatagcttgaca-gt |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| || |
|
|
| T |
13738256 |
ttttggattattgtgcatggtgatatgtgtggtgcatgattgcatcttacttttgttaaaaatgaactgcaaaattggagaaaggcatagtttgacatgt |
13738157 |
T |
|
| Q |
206 |
attctgcggtatgaactgagcatgccgaaaatgtgtatgacatactatgactttgagttgaaaagtatttgtcttagtc--ttgagtattcatagtaaaa |
303 |
Q |
| |
|
||||||||||||||||||||||| ||||||| |||||||| |||||||||||||||||||| ||||||||||||||||| ||||| ||||||||||||| |
|
|
| T |
13738156 |
attctgcggtatgaactgagcataccgaaaacgtgtatgatatactatgactttgagttgagaagtatttgtcttagtcttttgagcattcatagtaaaa |
13738057 |
T |
|
| Q |
304 |
tgtatgaaattttctgaaaacagtttaggagaatcccagaaggtcatccatacacctacttcgtagttaatatacgattatgtgatgat |
392 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||| |||||||||||| ||||| |
|
|
| T |
13738056 |
tgtatgaaattttctgaaaacagtttaggagaatcccagaaggtcattcgtacacctacttcgtagttaaaatacgattatgttatgat |
13737968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 14 - 392
Target Start/End: Complemental strand, 13765181 - 13764800
Alignment:
| Q |
14 |
atcaaatttctaaatcccctatttttgcattgattttggtgtaagattgcatcttactctgtaatatttcttttgagtggagaaatgtatgatttttgga |
113 |
Q |
| |
|
|||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||| |
|
|
| T |
13765181 |
atcaaatttctaaatcccct-tttttgatttgattttggtgtaagattgcatcttactctgtaatatgttttttgagtggagaaatgtatgatttttgga |
13765083 |
T |
|
| Q |
114 |
ttattgtgcatggtgatatgtgtggtgcatgattgcatcttacttttgttaaaaatgaactgcaaaattgga-gaaaggcatagcttgaca-gtattctg |
211 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||| |
|
|
| T |
13765082 |
ttattgtgcatggtgatatgtgtggtgcttgattgcatcttacttttgttaaaaatgaactgcaaaattggatgaaaggcatagcttgacatatattctg |
13764983 |
T |
|
| Q |
212 |
cggtatgaactgagcatgccgaaaatgtgtatgacatactatgactttgagttgaaaagtatttgtcttagtc--ttgagtattcatagtaaaatgtatg |
309 |
Q |
| |
|
| ||||||||| ||||||||||||| |||||||| ||||||||| |||| ||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
13764982 |
cagtatgaacttagcatgccgaaaacgtgtatgatatactatgagtttgggttgaaaagtatttgtcttagtcttttgagtattcatagtaaaatgtatg |
13764883 |
T |
|
| Q |
310 |
aaattttctgaaaacagtttaggagaatcccagaaggtcatccatacacctacttcgtagttaatatacgattatgtgatgat |
392 |
Q |
| |
|
|||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| |||||||||||| ||||| |
|
|
| T |
13764882 |
aaattttctgaaaacagtttaggagaataccacaaggtcatccatacacctacttcgtagttaaaatacgattatgttatgat |
13764800 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 14 - 392
Target Start/End: Complemental strand, 13751780 - 13751407
Alignment:
| Q |
14 |
atcaaatttctaaatcccctatttttgcattgattttggtgtaagattgcatcttactctgtaatatttcttttgagtggagaaatgtatgatttttgga |
113 |
Q |
| |
|
|||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13751780 |
atcaaatttctaaatcccct-tttttgttttgattttggtgtaagattgcatcttactctgtaatatttcttttgagtggagaaatgtatgatttttgga |
13751682 |
T |
|
| Q |
114 |
ttattgtgcatggtgatatgtgtggtgcatgattgcatcttacttttgttaaaaatgaactgcaaaattggagaaaggcatagcttgaca-gtattctgc |
212 |
Q |
| |
|
|||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| | ||||||||||||||||||| |||| ||||| ||| |
|
|
| T |
13751681 |
ttattgtgcatggtgatatgcgtggt-------tgcatcttacttttgttaaaaatgaactgcgatattggagaaaggcatagctggacatgtattttgc |
13751589 |
T |
|
| Q |
213 |
ggtatgaactgagcatgccgaaaatgtgtatgacatactatgactttgagttgaaaagtatttgtcttagtctt--gagtattcatagtaaaatgtatga |
310 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||| | |
|
|
| T |
13751588 |
ggtatgaactgagcatgccgaaaacgtgtatgatatactatgactttgagttgaaaagtacttgtcttagtcttttgagtattcatagtaaaatgtatta |
13751489 |
T |
|
| Q |
311 |
aattttctgaaaacagtttaggagaatcccagaaggtcatccatacacctacttcgtagttaatatacgattatgtgatgat |
392 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| | |||| ||||||| ||||| |
|
|
| T |
13751488 |
aattttctgaaaacagtttaggagaatcccaggaggtcatccatacacctacttcgtagtttaaatacaattatgttatgat |
13751407 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 343 - 392
Target Start/End: Complemental strand, 11614287 - 11614238
Alignment:
| Q |
343 |
aaggtcatccatacacctacttcgtagttaatatacgattatgtgatgat |
392 |
Q |
| |
|
|||||||||||||||||||||||| | |||| |||||||||||| ||||| |
|
|
| T |
11614287 |
aaggtcatccatacacctacttcgcaattaaaatacgattatgttatgat |
11614238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 123 - 183
Target Start/End: Complemental strand, 12069029 - 12068969
Alignment:
| Q |
123 |
atggtgatatgtgtggtgcatgattgcatcttacttttgttaaaaatgaactgcaaaattg |
183 |
Q |
| |
|
||||||||||||||| || |||||||||||||||||||||| |||||||||||||| |||| |
|
|
| T |
12069029 |
atggtgatatgtgtgatgaatgattgcatcttacttttgttgaaaatgaactgcaacattg |
12068969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 333 - 392
Target Start/End: Complemental strand, 15996294 - 15996235
Alignment:
| Q |
333 |
agaatcccagaaggtcatccatacacctacttcgtagttaatatacgattatgtgatgat |
392 |
Q |
| |
|
|||||| || |||||||||||||||| ||||||| |||||| |||||||||||| ||||| |
|
|
| T |
15996294 |
agaatctcaaaaggtcatccatacacatacttcgcagttaaaatacgattatgtaatgat |
15996235 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University