View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18188_high_4 (Length: 289)

Name: NF18188_high_4
Description: NF18188
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18188_high_4
NF18188_high_4
[»] chr6 (12 HSPs)
chr6 (8-271)||(6526427-6526690)
chr6 (37-271)||(6505535-6505772)
chr6 (102-271)||(6516058-6516227)
chr6 (40-271)||(13035634-13035865)
chr6 (201-266)||(6465393-6465458)
chr6 (33-259)||(6461706-6461932)
chr6 (204-270)||(6520629-6520695)
chr6 (203-271)||(6473098-6473166)
chr6 (113-259)||(6496740-6496886)
chr6 (203-271)||(6528248-6528316)
chr6 (8-166)||(6472903-6473061)
chr6 (215-266)||(6523453-6523504)
[»] chr7 (1 HSPs)
chr7 (89-178)||(9665240-9665329)
[»] chr4 (1 HSPs)
chr4 (89-178)||(13536264-13536353)
[»] chr1 (2 HSPs)
chr1 (102-133)||(35231396-35231427)
chr1 (102-131)||(35243036-35243065)


Alignment Details
Target: chr6 (Bit Score: 192; Significance: 1e-104; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 8 - 271
Target Start/End: Complemental strand, 6526690 - 6526427
Alignment:
Q  8 aagcaaaggtgtgagagaaggattgcgtgatgaaattgtttcagcactttgtaaggatgttgaaggactgaatttatcaacaataaaaacaaaatcatct 107  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  6526690 aagcaaaggtgtgagagatggattgcgtgatgaaattgtttcagcactttgtaaggatgttgaaggactgaattcatcaacaataaaaacaaaatcatct 6526591  T
Q  108 tatttttatggaaaattgattgcaagagcagctaggcttgcattggtagcggaagaggttttcttctttgaagccattgaaaaggttagaagttttttga 207  Q
    ||||||||||||||||||||||||||||| || || ||||||||| |||||||||||||||  ||| |||| |  |||  ||| |||||||  | |||||    
T  6526590 tatttttatggaaaattgattgcaagagctgcaagacttgcattgatagcggaagaggtttgtttccttgatgtgattccaaaagttagaaagtatttga 6526491  T
Q  208 aggaaaccattgagccttggcttgatggaacttttaatggaaatggatttctttatgataaaaa 271  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6526490 aggaaaccattgagccttggcttgatggaacttttaatggaaatggatttctttatgataaaaa 6526427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 37 - 271
Target Start/End: Complemental strand, 6505772 - 6505535
Alignment:
Q  37 atgaaattgtttcagcactttgtaaggatgttgaaggactgaatttatc---aacaataaaaacaaaatcatcttatttttatggaaaattgattgcaag 133  Q
    |||||||||||||| |||||| ||| |||||||||||  | || | |||   ||||| | |||||||||| |||||||||||||||||||| ||||||||    
T  6505772 atgaaattgtttcatcactttctaaagatgttgaaggtttaaactcatctgcaacaaaacaaacaaaatcgtcttatttttatggaaaattaattgcaag 6505673  T
Q  134 agcagctaggcttgcattggtagcggaagaggttttcttctttgaagccattgaaaaggttagaagttttttgaaggaaaccattgagccttggcttgat 233  Q
    ||||||||||||||||||| |||| |||||||||||||||||||| || |||||||| || ||||  |||||||||||||||||||||||||||||||||    
T  6505672 agcagctaggcttgcattgatagctgaagaggttttcttctttgatgctattgaaaaagtaagaaactttttgaaggaaaccattgagccttggcttgat 6505573  T
Q  234 ggaacttttaatggaaatggatttctttatgataaaaa 271  Q
    |||||||||||||||||||||||||| |||||||||||    
T  6505572 ggaacttttaatggaaatggatttctatatgataaaaa 6505535  T

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Target: chr6; HSP #3
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 102 - 271
Target Start/End: Original strand, 6516058 - 6516227
Alignment:
Q  102 tcatcttatttttatggaaaattgattgcaagagcagctaggcttgcattggtagcggaagaggttttcttctttgaagccattgaaaaggttagaagtt 201  Q
    |||||||| || |||||| ||||||||||||||||||| ||| | |||||| |||| |||||  |||| ||| |||| || ||| |||| || ||||| |    
T  6516058 tcatcttacttctatggacaattgattgcaagagcagcaaggttagcattgatagctgaagaattttttttcgttgacgctattcaaaaagtcagaagct 6516157  T
Q  202 ttttgaaggaaaccattgagccttggcttgatggaacttttaatggaaatggatttctttatgataaaaa 271  Q
    ||||||||||||| ||||| || |||||||||||||||||||| |||||||||||||| ||||| |||||    
T  6516158 ttttgaaggaaacaattgaaccatggcttgatggaacttttaacggaaatggatttctgtatgacaaaaa 6516227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 40 - 271
Target Start/End: Original strand, 13035634 - 13035865
Alignment:
Q  40 aaattgtttcagcactttgtaaggatgttgaaggactgaatttatcaacaataaaaacaaaatcatcttatttttatggaaaattgattgcaagagcagc 139  Q
    ||||||||||||| ||||  || ||||||||||| || || | |||| | |||| ||| | ||||||||| ||||||||||||||||| |||||||| ||    
T  13035634 aaattgtttcagctctttcgaaagatgttgaaggtctaaagtcatcaccgataacaacgacatcatcttacttttatggaaaattgatagcaagagctgc 13035733  T
Q  140 taggcttgcattggtagcggaagaggttttcttctttgaagccattgaaaaggtta-gaagttttttgaaggaaaccattgagccttggcttgatggaac 238  Q
     ||| | |||||| || | ||||||||    | | |||| || |||  ||  || | |||||  || ||||||| |||||||||||||||||||||||||    
T  13035734 aaggttagcattgataactgaagaggtgaattaccttgatgcaattccaattgtgaagaagtactt-gaaggaatccattgagccttggcttgatggaac 13035832  T
Q  239 ttttaatggaaatggatttctttatgataaaaa 271  Q
    ||||||||||||||||||||| |||||||||||    
T  13035833 ttttaatggaaatggatttctctatgataaaaa 13035865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 201 - 266
Target Start/End: Complemental strand, 6465458 - 6465393
Alignment:
Q  201 tttttgaaggaaaccattgagccttggcttgatggaacttttaatggaaatggatttctttatgat 266  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  6465458 tttttgaaggaaactattgagccttggcttgatggaacttttaatggaaatggatttctctatgat 6465393  T

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Target: chr6; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 33 - 259
Target Start/End: Original strand, 6461706 - 6461932
Alignment:
Q  33 cgtgatgaaattgtttcagcactttgtaaggatgttgaaggactgaatttatcaacaataaaaacaaaatcatcttatttttatggaaaattgattgcaa 132  Q
    ||||||||||| |||||| ||||||  || |||||||| || ||  ||| ||||| |||||  ||||||   ||||| | |||||| |||||||||| ||    
T  6461706 cgtgatgaaatcgtttcatcacttttaaaagatgttgagggtctagattcatcaaaaataaccacaaaagattcttactcttatggtaaattgattggaa 6461805  T
Q  133 gagcagctaggcttgcattggtagcggaagaggttttcttctttgaagccattgaaaaggtta-gaagttttttgaaggaaaccattgagccttggcttg 231  Q
    | || || ||| |||||||| |||| ||||||||||  | ||| || |  |||  |||||||| |||||||||  ||| ||||||||||||||||| | |    
T  6461806 gggcggcgaggtttgcattgatagctgaagaggtttcttacttagatgtgattccaaaggttaagaagtttttaaaag-aaaccattgagccttggttag 6461904  T
Q  232 atggaacttttaatggaaatggatttct 259  Q
    |||||||||| ||||| |||||||||||    
T  6461905 atggaactttaaatgggaatggatttct 6461932  T

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Target: chr6; HSP #7
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 204 - 270
Target Start/End: Original strand, 6520629 - 6520695
Alignment:
Q  204 ttgaaggaaaccattgagccttggcttgatggaacttttaatggaaatggatttctttatgataaaa 270  Q
    ||||||||||| |||||||||||||||||||||||||||| || |||||| ||||| ||||||||||    
T  6520629 ttgaaggaaactattgagccttggcttgatggaacttttagtgaaaatggttttctatatgataaaa 6520695  T

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Target: chr6; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 203 - 271
Target Start/End: Original strand, 6473098 - 6473166
Alignment:
Q  203 tttgaaggaaaccattgagccttggcttgatggaacttttaatggaaatggatttctttatgataaaaa 271  Q
    |||||||||| |||  ||||||||||| |||||||| |||||||||||||||||||| |||||||||||    
T  6473098 tttgaaggaatccaccgagccttggctcgatggaacatttaatggaaatggatttctctatgataaaaa 6473166  T

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Target: chr6; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 113 - 259
Target Start/End: Complemental strand, 6496886 - 6496740
Alignment:
Q  113 ttatggaaaattgattgcaagagcagctaggcttgcattggtagcggaagaggttttcttctttgaagccattgaaaaggtta-gaagttttttgaagga 211  Q
    |||||| |||||||||| ||| || || ||| |||||||| |||| ||||||||||  | ||| || |  |||  |||||||| ||||||||| ||| ||    
T  6496886 ttatggtaaattgattggaagggcggcgaggtttgcattgatagccgaagaggtttcatacttagatgtgattccaaaggttaagaagttttt-gaaaga 6496788  T
Q  212 aaccattgagccttggcttgatggaacttttaatggaaatggatttct 259  Q
    |||||||||||||||| | ||||||||||| ||||| |||||||||||    
T  6496787 aaccattgagccttggttagatggaactttaaatgggaatggatttct 6496740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 203 - 271
Target Start/End: Complemental strand, 6528316 - 6528248
Alignment:
Q  203 tttgaaggaaaccattgagccttggcttgatggaacttttaatggaaatggatttctttatgataaaaa 271  Q
    ||||||||| |  |||||||||||||||||||||||||| || || ||||||||||| |||||||||||    
T  6528316 tttgaaggagatgattgagccttggcttgatggaactttcaaaggtaatggatttctctatgataaaaa 6528248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 8 - 166
Target Start/End: Original strand, 6472903 - 6473061
Alignment:
Q  8 aagcaaaggtgtgagagaaggattgcgtgatgaaattgtttcagcactttgtaaggatgttgaaggactgaatttatcaacaataaaaacaaaatcatct 107  Q
    |||||||||||| | ||||| ||  | ||| |||||||||||||| ||||  || ||||||||  | || || | |||| | |||| ||||  |||||||    
T  6472903 aagcaaaggtgtaaaagaagaatcacatgacgaaattgtttcagctctttcaaaagatgttgagagtctaaagtcatcaccgataacaacagcatcatct 6473002  T
Q  108 tatttttatggaaaattgattgcaagagcagctaggcttgcattggtagcggaagaggt 166  Q
    || ||||||||||||||||| ||||| || || ||| | |||||| |||| ||||||||    
T  6473003 tacttttatggaaaattgatagcaagggctgcgaggttagcattgatagccgaagaggt 6473061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 215 - 266
Target Start/End: Complemental strand, 6523504 - 6523453
Alignment:
Q  215 cattgagccttggcttgatggaacttttaatggaaatggatttctttatgat 266  Q
    ||||||||||||||||||||||||||| ||   |||||||||||| ||||||    
T  6523504 cattgagccttggcttgatggaactttcaaataaaatggatttctatatgat 6523453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 89 - 178
Target Start/End: Original strand, 9665240 - 9665329
Alignment:
Q  89 aataaaaacaaaatcatcttatttttatggaaaattgattgcaagagcagctaggcttgcattggtagcggaagaggttttcttctttga 178  Q
    ||||| ||||| ||| || || |||||||||||||||||||||||||||||||||||||||||| |||| ||||| ||||| ||||||||    
T  9665240 aataacaacaacatcttcatacttttatggaaaattgattgcaagagcagctaggcttgcattgatagctgaagacgtttttttctttga 9665329  T

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Target: chr4 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 89 - 178
Target Start/End: Original strand, 13536264 - 13536353
Alignment:
Q  89 aataaaaacaaaatcatcttatttttatggaaaattgattgcaagagcagctaggcttgcattggtagcggaagaggttttcttctttga 178  Q
    ||||| ||||| ||| || || |||||||||||||||||||||||||||||||||||||||||| |||| ||||| ||||| ||||||||    
T  13536264 aataacaacaacatcttcatacttttatggaaaattgattgcaagagcagctaggcttgcattgatagctgaagacgtttttttctttga 13536353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 102 - 133
Target Start/End: Original strand, 35231396 - 35231427
Alignment:
Q  102 tcatcttatttttatggaaaattgattgcaag 133  Q
    ||||||||||||||||||||||||||||||||    
T  35231396 tcatcttatttttatggaaaattgattgcaag 35231427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 102 - 131
Target Start/End: Original strand, 35243036 - 35243065
Alignment:
Q  102 tcatcttatttttatggaaaattgattgca 131  Q
    ||||||||||||||||||||||||||||||    
T  35243036 tcatcttatttttatggaaaattgattgca 35243065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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