View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18188_low_1 (Length: 1140)
Name: NF18188_low_1
Description: NF18188
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18188_low_1 |
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| [»] scaffold0037 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 1033; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 1033; E-Value: 0
Query Start/End: Original strand, 10 - 1106
Target Start/End: Original strand, 8058182 - 8059278
Alignment:
| Q |
10 |
acatcatcacgacggccttttaggtcatccgagattcttgttcacgatagttgaagaatcaaaagaggatttagaatccgaagatggtaaatgtggaaag |
109 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| ||||||||||||||| |
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| T |
8058182 |
acatcatcacgacggccttttaggtcatccgagattcttgttcacaatagttgaagaatcaaaagaggatttagaatctgaagacggtaaatgtggaaag |
8058281 |
T |
|
| Q |
110 |
gattcaagaggtagaagcttaggtgatttgttagatgtggaaacaccttatttgacacctatagcatctccacattttttcactcctatgaattgtagtc |
209 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8058282 |
gattcaagaggtagaagcttaggtgatctgttagatgtggaaacaccttatttgacacctatagcatctccacattttttcactcctatgaattgtagtc |
8058381 |
T |
|
| Q |
210 |
cttattgtagcccttataatcaacatggattcaaccctctttttgaatcaacaactgatgcagagttcaatagattaaagtcatcgcctcctccgaaatt |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8058382 |
cttattgtagcccttataatcaacatggattcaaccctctttttgaatcaacaactgatgcagagttcaatagattaaagtcatcgcctcctccgaaatt |
8058481 |
T |
|
| Q |
310 |
caagttcttacaagaagcagaagagaaacttagaagaaaaatgcaagatgacaacaagggtattaatggaaatgaagttgataattctctcattacaata |
409 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8058482 |
caagttcttacaagaagcagaagagaaacttagaagaaaaatgcaagatgacaacaagggtattaatggaaatgaagttgataattctctcattacaata |
8058581 |
T |
|
| Q |
410 |
attgttgataagaaatatgaaagagagattaaccatcatcaatgtcatctacaacagtaccattcaagcacatcacaggtacttcccttagcttcctgac |
509 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8058582 |
attgttgataagaaatatgaaagagaggttaaccatcatcaatgtcatctacaacagtaccattcaagcacatcacaggtacttcccttagcttcctgac |
8058681 |
T |
|
| Q |
510 |
acaaattaccaataagaagaatttggatccgctcgagttgatgcacgatgttgtagttgtagagaccgttagatttagagaaaatgtcagctaacaccga |
609 |
Q |
| |
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| T |
8058682 |
acaaattaccaataagaagaatttggatccgctcgagttgatgcacgatgttgtagttgtagagaccgttagatttagagaaaatgtcagctaacaccga |
8058781 |
T |
|
| Q |
610 |
agttcgatcaatcgattaagaacccctttattttattttttcctacattactctttctaattacattgtgaagaatttcaatttgttgtttagaagtctt |
709 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8058782 |
agttcgatcaatcgattaagaacccctttattttattttttcctacattactctttctaattacattgtgaagaatttcaatttgttgtttagaagtctt |
8058881 |
T |
|
| Q |
710 |
ggattttgtttcttacttttgagtaatttgtgactgtgagatgcaactatagtttaatttaatctgccaaatcacatgtgagatgtactctcaatgtttc |
809 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8058882 |
ggattttgtttcttacttttgagtaatttgtgactgtgagatgcaactatagtttaatttaatctgccaaatcacatgtgagatgtactctcaatgtttc |
8058981 |
T |
|
| Q |
810 |
aaaagatatggagacaataatcttttattagaaattccatgctaaccaattttgtttttcattctactaatgtatctgacatgatactgtcataattaat |
909 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8058982 |
aaaagatatggagacaataatcttttattagaaattccatgctgaccaattttgtttttcattctactaatgtatctgacatgatactgtcataattaat |
8059081 |
T |
|
| Q |
910 |
nnnnnnnnttgagtgatgagaattgagatggtcctactcttctatacaatgcatctgtctaagagaaattgaagtgaatttgatatttcattttcttctc |
1009 |
Q |
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| T |
8059082 |
aaaaaaaattgagtgatgagaattgagatggtcctactcttctatacaatgcatctgtctaagagacattgaagtgaatttgatatttcattttcttctc |
8059181 |
T |
|
| Q |
1010 |
tttacaagcctgtgaataagacatatcttgaatcaactttgtctcatgacagtcatatcctggattcctatggttgcaattatccctcatatatgta |
1106 |
Q |
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| T |
8059182 |
tttacaagcctgtgaataagacatatcttgaatcaacattgtctcatgacagtcatatcctggattcctatggttgcaattattcctcctatatgta |
8059278 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 330 - 486
Target Start/End: Complemental strand, 24777147 - 24776995
Alignment:
| Q |
330 |
aagagaaacttagaagaaaaatgcaagatgacaacaagggtattaatggaaatgaagttgat-aattctctcattacaataattgttgataagaaatatg |
428 |
Q |
| |
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||||||| ||||||||||| |||||||| |||||||||||||||||| |||| |||||||| | |||||||||||||||| |||||||| ||||||||| |
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| T |
24777147 |
aagagaagcttagaagaaatttgcaagataacaacaagggtattaatgaaaataaagttgatgatttctctcattacaatagttgttgattagaaatatg |
24777048 |
T |
|
| Q |
429 |
aaagagagattaaccatcatcaatgtcatctacaacagtaccattcaagcacatcaca |
486 |
Q |
| |
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|| | ||| || || |||||| |||| |||||||||| |||||||||||||||| |
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| T |
24777047 |
aa--acagacta---ataatcaatttcatatacaacagtattattcaagcacatcaca |
24776995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 60; E-Value: 5e-25
Query Start/End: Original strand, 251 - 338
Target Start/End: Complemental strand, 24777325 - 24777239
Alignment:
| Q |
251 |
tttgaatcaacaactgatgcagagttcaatagattaaagtcatcgcctcctccgaaattcaagttcttacaagaagcagaagagaaac |
338 |
Q |
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| T |
24777325 |
tttgaatcgacaactgatgcagagttccatagattaaagtcatcacct-ctccaaaattcaagttcttacaagaagcaaaagagaaac |
24777239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 58; Significance: 8e-24; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 58; E-Value: 8e-24
Query Start/End: Original strand, 860 - 1052
Target Start/End: Complemental strand, 10428908 - 10428722
Alignment:
| Q |
860 |
tttgtttttcattctactaatgtatctgacatgatactgtcataattaatnnnnnnnn---ttgagtgatgagaattgagatggtcctactcttctatac |
956 |
Q |
| |
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| T |
10428908 |
tttgtttttcattttactaatgtatccgacatgacactgtcgtaattaataaaaaaaaaaattgagtgatgagaattgagatgctcatactctttcata- |
10428810 |
T |
|
| Q |
957 |
aatgcatctgtctaagagaaattgaagtgaatttgatatttcattttcttctctttacaagcctgtgaataagacatatcttgaatcaactttgtc |
1052 |
Q |
| |
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||||||| || ||||||||||||||||||||||||||||||||||||||||| | | ||| ||||||||||||||||||| ||||| |
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| T |
10428809 |
--------tgtctaaaggacattgaagtgaatttgatatttcattttcttctctttacaagacgataaatgagacatatcttgaatcaacgttgtc |
10428722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 50; E-Value: 5e-19
Query Start/End: Original strand, 103 - 172
Target Start/End: Complemental strand, 10429109 - 10429040
Alignment:
| Q |
103 |
tggaaaggattcaagaggtagaagcttaggtgatttgttagatgtggaaacaccttatttgacacctata |
172 |
Q |
| |
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|||||||||||||| |||||||||||||||| ||||||||||| || |||||||||||||||||| |||| |
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| T |
10429109 |
tggaaaggattcaataggtagaagcttaggttatttgttagatttgaaaacaccttatttgacacttata |
10429040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0037 (Bit Score: 53; Significance: 8e-21; HSPs: 1)
Name: scaffold0037
Description:
Target: scaffold0037; HSP #1
Raw Score: 53; E-Value: 8e-21
Query Start/End: Original strand, 860 - 1057
Target Start/End: Complemental strand, 34959 - 34767
Alignment:
| Q |
860 |
tttgtttttcattctactaatgtatctgacatgatactgtcataattaat----nnnnnnnnttgagtgatgagaattgagatggtcctactcttctata |
955 |
Q |
| |
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||||||||||||| |||||||||||| ||||||| || ||| |||||||| ||||||||||| ||||||||||||| |||||| |
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| T |
34959 |
tttgtttttcattttactaatgtatccgacatgacacggtcgtaattaataaaaaaaaaaaattgagtgatgataattgagatggtcatactct------ |
34866 |
T |
|
| Q |
956 |
caatgcatctgtctaagagaaattgaagtgaatttgatatttcattttcttctctttacaagcctgtgaataagacatatcttgaatcaactttgtctca |
1055 |
Q |
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| ||| ||||||| || ||||||||||||||||||||||||||||||||||||||||| | | ||| ||||||||||||||||||| ||||| || |
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| T |
34865 |
---ttcatatgtctaaaggacattgaagtgaatttgatatttcattttcttctctttacaagacgataaatgagacatatcttgaatcaacgttgtccca |
34769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 557 - 590
Target Start/End: Complemental strand, 6188480 - 6188447
Alignment:
| Q |
557 |
atgttgtagttgtagagaccgttagatttagaga |
590 |
Q |
| |
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|||||||||||||||||||||||| ||||||||| |
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| T |
6188480 |
atgttgtagttgtagagaccgttaaatttagaga |
6188447 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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