View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18188_low_10 (Length: 248)
Name: NF18188_low_10
Description: NF18188
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18188_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 236; Significance: 1e-130; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 27569590 - 27569351
Alignment:
| Q |
1 |
ccttcccctcataggcaagtgcacaattacaatgccagtaacaaagtcaattattccacttaatgacacattcctcattctatggtgcctgttaggatat |
100 |
Q |
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| T |
27569590 |
ccttcccctcataggcaagtgcacaattacaatgccagtaacaaagtcaattattccacttaatgacacattcctcattctatggttcctgttaggatat |
27569491 |
T |
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| Q |
101 |
ccttatctaaagaattgaatggttactacttactgtgtaggctaaatgatgggatttactgagagaaaacgactgacgaaccaccacatggttttgtctt |
200 |
Q |
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| T |
27569490 |
ccttatctaaagaattgaatggttactacttactgtgtaggctaaatgatgggatttactgagagaaaacgactgacgaaccaccacatggttttgtctt |
27569391 |
T |
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| Q |
201 |
gtagattttcatcaagagtcacaagagattttagaataat |
240 |
Q |
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| T |
27569390 |
gtagattttcatcaagagtcacaagagattttagaataat |
27569351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 16 - 132
Target Start/End: Original strand, 27426412 - 27426527
Alignment:
| Q |
16 |
caagtgcacaattacaatgccagtaacaaagtcaattattccacttaatgacacattcctcattctatggtgcctgttaggatatccttatctaaagaat |
115 |
Q |
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| T |
27426412 |
caagtgcacaataacaattc-agtaacaaggtcaattatttcactgaatgacacaggcctcattccatggtccctgttaggatatccttatttaaagagt |
27426510 |
T |
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| Q |
116 |
tgaatggttactactta |
132 |
Q |
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| T |
27426511 |
tgaatggttagtactta |
27426527 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 49 - 134
Target Start/End: Original strand, 27416294 - 27416379
Alignment:
| Q |
49 |
aattattccacttaatgacacattcctcattctatggtgcctgttaggatatccttatctaaagaattgaatggttactacttact |
134 |
Q |
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| T |
27416294 |
aattatttcactgaatgacataggcctcattatatggttcctgttaggatatccttatctaaagaattgaatggttagtacttact |
27416379 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 36 - 121
Target Start/End: Original strand, 27420821 - 27420906
Alignment:
| Q |
36 |
cagtaacaaagtcaattattccacttaatgacacattcctcattctatggtgcctgttaggatatccttatctaaagaattgaatg |
121 |
Q |
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| T |
27420821 |
cagtaacaaagtcaattgtttcactgaatgacataggctgcattctatggtgcctgttaggatatccttatctaaagaattgaatg |
27420906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 179 - 240
Target Start/End: Original strand, 27420931 - 27420992
Alignment:
| Q |
179 |
aaccaccacatggttttgtcttgtagattttcatcaagagtcacaagagattttagaataat |
240 |
Q |
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| T |
27420931 |
aaccaccacatggtgttgtcttatagattttcatcaagagacacaagagattttagaataat |
27420992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 73 - 130
Target Start/End: Original strand, 27413360 - 27413417
Alignment:
| Q |
73 |
cctcattctatggtgcctgttaggatatccttatctaaagaattgaatggttactact |
130 |
Q |
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| T |
27413360 |
cctcattctatggttcctgttaggatatccttatcttaagaattgaatggttattact |
27413417 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 173 - 240
Target Start/End: Original strand, 27413443 - 27413509
Alignment:
| Q |
173 |
ctgacgaaccaccacatggttttgtcttgtagattttcatcaagagtcacaagagattttagaataat |
240 |
Q |
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| T |
27413443 |
ctgaagaaccatcacatggtgttgtcttatagattttca-caatagtcacaatagattttagaataat |
27413509 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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