View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18188_low_12 (Length: 243)
Name: NF18188_low_12
Description: NF18188
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18188_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 181; Significance: 6e-98; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 27569766 - 27569991
Alignment:
| Q |
1 |
cttatagcaagcaatgttacttatataatcatatgtagtatgttattaagtgcaataaaccaaaaacagaaaggagatatttgagtagttgaattcattg |
100 |
Q |
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| T |
27569766 |
cttatagcaagcaatgttacttatataatcatatgcagtatgttcttaagtgcaataaaccaaaaacagagaggagatatttgagtagtcgaattcattg |
27569865 |
T |
|
| Q |
101 |
tcattaaacaaaaaatatttgctctataaatttctcaatctaatggtcattttttctcatctttacaatttgttaagatgcgagtttacnnnnnnntatc |
200 |
Q |
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| T |
27569866 |
tcattaaacaaaatatatttgttctataaatttctcaatctaatggtcattttttctcatctttacaatttgttaagatgcgagtttacaaaaaaatatc |
27569965 |
T |
|
| Q |
201 |
actactaaactatgtcagtctcttct |
226 |
Q |
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|||||||||||||||||||||||||| |
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| T |
27569966 |
actactaaactatgtcagtctcttct |
27569991 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 27423641 - 27423534
Alignment:
| Q |
1 |
cttatagcaagcaatgttacttatataatcatatgtagtatgttattaagtgcaataaaccaaaaacagaaaggagatatttgagtagttgaattcattg |
100 |
Q |
| |
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|||||||||||||| ||||| ||||| |||||| | || ||| ||||||||||||||||||||||| ||||||||| |||||||||| |||||||||| |
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| T |
27423641 |
cttatagcaagcaacattactcatatagtcatatttcataagtttttaagtgcaataaaccaaaaacacaaaggagatgtttgagtagtcgaattcattg |
27423542 |
T |
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| Q |
101 |
tcattaaa |
108 |
Q |
| |
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|||||||| |
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|
| T |
27423541 |
tcattaaa |
27423534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 2 - 171
Target Start/End: Complemental strand, 27413090 - 27412918
Alignment:
| Q |
2 |
ttatagcaagcaatgttacttatataatcatatgtagtatgttattaagtgcaataaaccaaaaacagaaaggagatatttgagtagttgaattcattgt |
101 |
Q |
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|||||||||||||| ||||| ||||| || ||| | || ||| |||||||||||||||||||||| | | ||| || |||| |||| |||||| || | |
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| T |
27413090 |
ttatagcaagcaatattactcatatagtcctatttcttaagtttctaagtgcaataaaccaaaaacatagaagagttacttgaatagtcgaattcgtttt |
27412991 |
T |
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| Q |
102 |
catta-aacaaaaaatatttgc--tctataaatttctcaatctaatggtcattttttctcatctttacaattt |
171 |
Q |
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||||| |||||||||||||| || |||||||| |||||||||| |||| |||||| |||||||||||||| |
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| T |
27412990 |
cattataacaaaaaatatttatattccataaatttgtcaatctaatagtcactttttcccatctttacaattt |
27412918 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 46 - 181
Target Start/End: Original strand, 27565714 - 27565843
Alignment:
| Q |
46 |
ttaagtgcaataaaccaaaaacagaaaggagatatttgagtagttgaattcattgtcattaaacaaaaaatatttgctctataaatttctcaatctaatg |
145 |
Q |
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| T |
27565714 |
ttaagtgcaataaaccaaaaacatagaagagctgcttgaatagtcgaattcattgtcgttaaacaaaa-----ttgatatacaa-tttatcaatctaatg |
27565807 |
T |
|
| Q |
146 |
gtcattttttctcatctttacaatttgttaagatgc |
181 |
Q |
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| T |
27565808 |
gtcatttttttgcatctttacaatttgataagatgc |
27565843 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 75 - 172
Target Start/End: Complemental strand, 27490319 - 27490220
Alignment:
| Q |
75 |
agatatttgagtagttgaattcattgtcattaaacaaaaaatatttgctctataaatttctcaatctaatggtcatt--ttttctcatctttacaatttg |
172 |
Q |
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|||| ||| |||||||||||||||||||||||||||| || ||| | ||||| |||||| | ||||||||| ||||| |||||| ||||||||||||| |
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| T |
27490319 |
agatgttttagtagttgaattcattgtcattaaacaataagtatatactctacaaatttttgaatctaatgttcatttcttttctagtctttacaatttg |
27490220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 45 - 120
Target Start/End: Complemental strand, 27426188 - 27426113
Alignment:
| Q |
45 |
attaagtgcaataaaccaaaaacagaaaggagatatttgagtagttgaattcattgtcattaaacaaaaaatattt |
120 |
Q |
| |
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||||||||| ||||||||||||| ||| ||| | ||||||||||||||||||| ||||||||||||| |||||| |
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| T |
27426188 |
attaagtgcgataaaccaaaaacgtaaaagagctgcttgagtagttgaattcattctcattaaacaaaacatattt |
27426113 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 54 - 152
Target Start/End: Original strand, 27497081 - 27497179
Alignment:
| Q |
54 |
aataaaccaaaaacagaaaggagatatttgagtagttgaattcattgtcattaaacaaaaaatatttgctctataaatttctcaatctaatggtcattt |
152 |
Q |
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| T |
27497081 |
aataaaccaaaaacacagagtagatgtttgagtagccgaattaattttcattaaacaaaaaatacatactgcataaacttgtcaatctaatggtaattt |
27497179 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 74 - 179
Target Start/End: Complemental strand, 1755036 - 1754929
Alignment:
| Q |
74 |
gagatatttgagtagttgaattcattgtcattaaacaaaaaa-tatttgctctataaatttctcaatctaatggtcattt-tttctcatctttacaattt |
171 |
Q |
| |
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|||||||||||| ||| ||||||||||||| |||||||||| | | |||||||||||| ||||||||| |||||| |||| |||||||||||||| |
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| T |
1755036 |
gagatatttgagaagtcaaattcattgtcatgaaacaaaaaaatgcatactctataaatttgtcaatctaaacctcatttctttcccatctttacaattt |
1754937 |
T |
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| Q |
172 |
gttaagat |
179 |
Q |
| |
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| T |
1754936 |
gataagat |
1754929 |
T |
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