View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18188_low_5 (Length: 292)
Name: NF18188_low_5
Description: NF18188
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18188_low_5 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 174; Significance: 1e-93; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 1 - 276
Target Start/End: Complemental strand, 8653588 - 8653297
Alignment:
| Q |
1 |
acacactgtcttcttcaaccccattaaaaaatttacagtcataaatctgcagaaacataaatggctgaagaaggtagtaatctcatcaaagttttgaaac |
100 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||| |
|
|
| T |
8653588 |
acacacggtcttcttcaaccccattaaaaaatttacagtcataaatctgcagaaacataaatggctgaagaaagtagtaatctcatcaaagttatgaaac |
8653489 |
T |
|
| Q |
101 |
tataaattgagaagaaaagnnnnnnnnttgaaataacccaacccatcaagtttgtggtagatt----------------gggtttattaatccttgctcc |
184 |
Q |
| |
|
|| |||||||||||||||| |||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
8653488 |
tagaaattgagaagaaaagaaaaaaaattgaaataacccaacccaacaagtttgtggtagattgggttcgttgcaagtggggtttattaatccttgctcc |
8653389 |
T |
|
| Q |
185 |
cnnnnnnntgaagtgttttttgattccataattacatttaacatcccagccattaagttaatcaaacagtgagatatttgcggtaggtattg |
276 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8653388 |
caaaaaaatgaagtgttttttgattccataattacatttaacatcccagccattaagttaatcaaacagtgagatatttgcggtaggtattg |
8653297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 76; Significance: 4e-35; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 193 - 276
Target Start/End: Original strand, 38698490 - 38698573
Alignment:
| Q |
193 |
tgaagtgttttttgattccataattacatttaacatcccagccattaagttaatcaaacagtgagatatttgcggtaggtattg |
276 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
38698490 |
tgaagtgttttttgattccataattacatttaatatcccagccattaagttaatcaaacagtgagatatttgcggtaggcattg |
38698573 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 32 - 119
Target Start/End: Original strand, 35107246 - 35107338
Alignment:
| Q |
32 |
tttacagtcataaatctgcagaaacataaatggctgaagaa-----ggtagtaatctcatcaaagttttgaaactataaattgagaagaaaag |
119 |
Q |
| |
|
|||||||||||| ||||||||||| |||||||||||||||| ||||||||||| |||||||| ||||||||| |||||||||||||||| |
|
|
| T |
35107246 |
tttacagtcatatatctgcagaaatataaatggctgaagaaacaacggtagtaatcttatcaaagtattgaaactagaaattgagaagaaaag |
35107338 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 194 - 270
Target Start/End: Original strand, 35107406 - 35107483
Alignment:
| Q |
194 |
gaagtgttttttgattccataattacatttaacatcccagccattaagttaatcaaa-cagtgagatatttgcggtag |
270 |
Q |
| |
|
|||| ||| ||||||||||||||||||| ||| || ||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
35107406 |
gaagcgttctttgattccataattacatataatattccagccattaagttaatcaaattggtgagatatttgcggtag |
35107483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University