View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18188_low_7 (Length: 278)
Name: NF18188_low_7
Description: NF18188
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18188_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 17 - 264
Target Start/End: Original strand, 2263556 - 2263805
Alignment:
| Q |
17 |
aaatatgcttttgaaaaactcaagtattgtctattgaagtaaataggattttcaaaaagcttaagttat-gtcttaaataggct-ggtgatacgcctttg |
114 |
Q |
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| T |
2263556 |
aaatatacttttgaaaaactcaagtattgtctattgaagtaaataagattttcaaaaagcttaagttattgtcttaaataggctaggtgataggtctttg |
2263655 |
T |
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| Q |
115 |
tcggatgatttaacctgtttctatctctaataatgatgttgaattaatatgaactgtcacatcttcatttaacgtgtcatgtcatagtatttaacaattg |
214 |
Q |
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| T |
2263656 |
tcggacgacttaatctgtttctatctctaatagtgatgttgaatcaatataaactgtcacatcttcatttaacgtgtcatgtcatagtatttaacgattg |
2263755 |
T |
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| Q |
215 |
aacttaatatactgttcaacgaacgaaattgctaattcgtaaaacatata |
264 |
Q |
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| T |
2263756 |
aacttaatgtaatgttcaacgaacgaaattgctaattcgtaaaacatata |
2263805 |
T |
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Target: chr1 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 148 - 193
Target Start/End: Original strand, 21324828 - 21324873
Alignment:
| Q |
148 |
tgatgttgaattaatatgaactgtcacatcttcatttaacgtgtca |
193 |
Q |
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| T |
21324828 |
tgatgtggaattcacatgaactatcacatcttcatttaacgtgtca |
21324873 |
T |
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