View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18189_high_3 (Length: 245)
Name: NF18189_high_3
Description: NF18189
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18189_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 8 - 234
Target Start/End: Original strand, 21783972 - 21784205
Alignment:
| Q |
8 |
gacatcatcatccaatgaatttccacaaaagggtaagcttgtaatgatcatgtcagaaatgtagaagtcagacacatcacatgtttcaaagtcacaaata |
107 |
Q |
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| T |
21783972 |
gacatcatcatccaatgaatttccacaaaagggtaagcttgtaatgatcatgtcagaaatgtagaagtcagacacatcacatgtttcaaagtcacaaata |
21784071 |
T |
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| Q |
108 |
tttcttccctcatcagctcccactcctgccatgttaatatcaccaaagctccctaaaagacagttgtagatgtcagaatataaataataacaat------ |
201 |
Q |
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| T |
21784072 |
tttcttccctcatcagctcccactcctgccatgttaatatcaccaaagctccctaaaagacagtcgtagatgtcagaatataaataataacaattaacaa |
21784171 |
T |
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| Q |
202 |
-gaaatagcaataaagtagccatacattgtgatg |
234 |
Q |
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|||||||||||||||||||| |||||||||||| |
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| T |
21784172 |
cgaaatagcaataaagtagccgtacattgtgatg |
21784205 |
T |
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