View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18189_low_4 (Length: 449)
Name: NF18189_low_4
Description: NF18189
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18189_low_4 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 416; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 7 - 438
Target Start/End: Original strand, 50407355 - 50407786
Alignment:
| Q |
7 |
aaaagcttgcatttgttgatccattttcggttaaaatagtaactgatcaagaagtgaaagagtctgcagcaaaaaattgtgatactaatgcaatggtttg |
106 |
Q |
| |
|
|||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50407355 |
aaaagcttgcatttgtcgatccattttcagttaaaatagtaactgatcaagaagtgaaagagtctgcagcaaaaaattgtgatactaatgcaatggtttg |
50407454 |
T |
|
| Q |
107 |
tgttgttgaagtaaaagaaactagatggtggcaaaatatttttagtccacctgaacaaggtgaagattttactatattacaagcccttttcagcatagac |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50407455 |
tgttgttgaagtaaaagaaactagatggtggcaaaatatttttagtccacctgaacaaggtgaagattttactatattacaagcccttttcagcatagac |
50407554 |
T |
|
| Q |
207 |
atgttattgctattctttgctggcacatgtggtgttggtggaactttaacagcaattgataatttaggtcaaattggaacctcactcggatacccaaaaa |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
50407555 |
atgttattgctattctttgctggcacatgtggtgttggtggaactttaacagcaattgataatttaggtcaaattggaacctcacttggatacccaaaaa |
50407654 |
T |
|
| Q |
307 |
caagcataagcacatttgtttcattagtgagtatttggaattatctaggaagagttttttctggttttgtttctgaacatgttttaacaaagtacaaatt |
406 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50407655 |
caagcataagcacatttgtttcattagtgagtatttggaattatctaggaagagttttttctggttttgtttctgaacatgttttaacaaagtacaaatt |
50407754 |
T |
|
| Q |
407 |
tccacgaccactcatgttcacattgatgatgt |
438 |
Q |
| |
|
||||||||||||||||||||||||||| |||| |
|
|
| T |
50407755 |
tccacgaccactcatgttcacattgattatgt |
50407786 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 234 - 409
Target Start/End: Original strand, 50385553 - 50385728
Alignment:
| Q |
234 |
tgtggtgttggtggaactttaacagcaattgataatttaggtcaaattggaacctcactcggatacccaaaaacaagcataagcacatttgtttcattag |
333 |
Q |
| |
|
||||||||||| |||||||| ||||||||||||||| | ||||| || ||||| ||||| |||| ||||| | |||||||||||| ||||| || |||| |
|
|
| T |
50385553 |
tgtggtgttggaggaactttgacagcaattgataatcttggtcagataggaacatcactaagatatccaaagaaaagcataagcacttttgtgtctttag |
50385652 |
T |
|
| Q |
334 |
tgagtatttggaattatctaggaagagttttttctggttttgtttctgaacatgttttaacaaagtacaaatttcc |
409 |
Q |
| |
|
| || |||||||||||||||||| | ||||| || || ||||||||||||||| || |||||||||||| |||||| |
|
|
| T |
50385653 |
taagcatttggaattatctaggacgtgttttctcaggatttgtttctgaacattttctaacaaagtacagatttcc |
50385728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 234 - 409
Target Start/End: Original strand, 50393972 - 50394147
Alignment:
| Q |
234 |
tgtggtgttggtggaactttaacagcaattgataatttaggtcaaattggaacctcactcggatacccaaaaacaagcataagcacatttgtttcattag |
333 |
Q |
| |
|
||||||||||| |||||||| ||||||||||||||| | ||||| || ||||| ||||| |||| ||||| | |||||||||||| ||||| || |||| |
|
|
| T |
50393972 |
tgtggtgttggaggaactttgacagcaattgataatcttggtcagataggaacatcactaagatatccaaagaaaagcataagcacttttgtgtctttag |
50394071 |
T |
|
| Q |
334 |
tgagtatttggaattatctaggaagagttttttctggttttgtttctgaacatgttttaacaaagtacaaatttcc |
409 |
Q |
| |
|
| || |||||||||||||||||| | ||||| || || ||||||||||||||| || |||||||||||| |||||| |
|
|
| T |
50394072 |
taagcatttggaattatctaggacgtgttttctcaggatttgtttctgaacattttctaacaaagtacagatttcc |
50394147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 164 - 409
Target Start/End: Original strand, 50390628 - 50390873
Alignment:
| Q |
164 |
aggtgaagattttactatattacaagcccttttcagcatagacatgttattgctattctttgctggcacatgtggtgttggtggaactttaacagcaatt |
263 |
Q |
| |
|
|||||| |||| ||| ||| | ||||| |||||||||||||||||||| | ||||| | || | | |||||| |||||||| | || |||||| || |
|
|
| T |
50390628 |
aggtgaggattatacgatacttcaagcacttttcagcatagacatgttgatactatttgtggcatgtatttgtggtattggtggatcattgacagcagtt |
50390727 |
T |
|
| Q |
264 |
gataatttaggtcaaattggaacctcactcggatacccaaaaacaagcataagcacatttgtttcattagtgagtatttggaattatctaggaagagttt |
363 |
Q |
| |
|
|||||| | ||||| || ||||| ||||| |||| ||||| | |||||||||||| ||||| || ||||| || |||||||||||||||||| | |||| |
|
|
| T |
50390728 |
gataatcttggtcagataggaacatcactaagatatccaaagaaaagcataagcacttttgtgtctttagtaagcatttggaattatctaggacgtgttt |
50390827 |
T |
|
| Q |
364 |
tttctggttttgtttctgaacatgttttaacaaagtacaaatttcc |
409 |
Q |
| |
|
| || || ||||||||||||||| || |||||||||||| |||||| |
|
|
| T |
50390828 |
tctcaggatttgtttctgaacattttctaacaaagtacagatttcc |
50390873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University