View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18189_low_7 (Length: 243)

Name: NF18189_low_7
Description: NF18189
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18189_low_7
NF18189_low_7
[»] chr1 (8 HSPs)
chr1 (11-243)||(28909925-28910170)
chr1 (156-207)||(48830124-48830175)
chr1 (134-172)||(26779951-26779989)
chr1 (152-201)||(4078193-4078242)
chr1 (134-207)||(7218100-7218173)
chr1 (156-209)||(19462814-19462867)
chr1 (134-171)||(34290243-34290280)
chr1 (152-216)||(45205029-45205094)
[»] chr4 (2 HSPs)
chr4 (150-241)||(53155200-53155291)
chr4 (134-179)||(28423529-28423574)
[»] chr7 (6 HSPs)
chr7 (132-207)||(17989047-17989122)
chr7 (152-207)||(47004058-47004113)
chr7 (157-207)||(2727409-2727459)
chr7 (158-214)||(9527140-9527197)
chr7 (134-171)||(12110367-12110404)
chr7 (134-178)||(28691861-28691905)
[»] chr3 (3 HSPs)
chr3 (134-208)||(35394524-35394598)
chr3 (155-214)||(2321138-2321198)
chr3 (156-214)||(24235731-24235790)
[»] chr8 (4 HSPs)
chr8 (152-240)||(35298521-35298612)
chr8 (134-204)||(42370387-42370457)
chr8 (155-207)||(27728068-27728120)
chr8 (155-207)||(29973052-29973104)
[»] chr6 (4 HSPs)
chr6 (152-207)||(1402967-1403022)
chr6 (158-240)||(2514638-2514722)
chr6 (134-171)||(34430487-34430524)
chr6 (134-178)||(26694878-26694922)
[»] chr5 (3 HSPs)
chr5 (62-121)||(3290733-3290792)
chr5 (156-238)||(18704084-18704167)
chr5 (134-217)||(34205199-34205284)
[»] chr2 (4 HSPs)
chr2 (134-215)||(36863651-36863733)
chr2 (52-92)||(37419594-37419634)
chr2 (156-214)||(13736341-13736399)
chr2 (134-207)||(11513869-11513942)


Alignment Details
Target: chr1 (Bit Score: 171; Significance: 6e-92; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 11 - 243
Target Start/End: Complemental strand, 28910170 - 28909925
Alignment:
Q  11 catcatcatggctctcttatctttttaggctatgtttagatttgacttgtatgagtttatctacttatataagcacttgtgagttgtgaaactg---ttt 107  Q
    |||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||| ||||   |||    
T  28910170 catcatcatggctctcttatctttttaggctatgtttagatt-gatttgtatgagtttatctacttatataagcacttgtgagttgtgagactgctgttt 28910072  T
Q  108 gttagatcttatgacttgtttatatgtt-----------attttcataacttcttcatgatagcttatgaaaacaatgtatagttgatattaaaatagtt 196  Q
    |||||||||||||||||||||||| |||           |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  28910071 gttagatcttatgacttgtttataagttgttttcatcttattttcataacttcttcatgctagcttatgaaaacaatgtatagttgatattaaaatagtt 28909972  T
Q  197 tgactttatttatcttttattctgaaattgcttatacataagcattt 243  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  28909971 tgactttatttatcttttattctgaaattgcttatacataagcattt 28909925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 156 - 207
Target Start/End: Original strand, 48830124 - 48830175
Alignment:
Q  156 atagcttatgaaaacaatgtatagttgatattaaaatagtttgactttattt 207  Q
    |||||||||||||||| | ||||| | |||| ||||||||||||||||||||    
T  48830124 atagcttatgaaaacagtttatagcttatatgaaaatagtttgactttattt 48830175  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 134 - 172
Target Start/End: Original strand, 26779951 - 26779989
Alignment:
Q  134 ttattttcataacttcttcatgatagcttatgaaaacaa 172  Q
    |||||||||||| ||||||| ||||||||||||||||||    
T  26779951 ttattttcataagttcttcaagatagcttatgaaaacaa 26779989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 152 - 201
Target Start/End: Original strand, 4078193 - 4078242
Alignment:
Q  152 catgatagcttatgaaaacaatgtatagttgatattaaaatagtttgact 201  Q
    |||||||||||||||||||||  ||||| | |||| ||||||||||||||    
T  4078193 catgatagcttatgaaaacaacttatagattatatgaaaatagtttgact 4078242  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 134 - 207
Target Start/End: Original strand, 7218100 - 7218173
Alignment:
Q  134 ttattttcataacttcttcatgatagcttatgaaaacaatgtatagttgatattaaaatagtttgactttattt 207  Q
    |||||||||||| |||| || ||||| ||||||||||||  ||||| | |||| |||| | |||||||||||||    
T  7218100 ttattttcataagttctccaggataggttatgaaaacaacttatagcttatatgaaaacaatttgactttattt 7218173  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 156 - 209
Target Start/End: Original strand, 19462814 - 19462867
Alignment:
Q  156 atagcttatgaaaacaatgtatagttgatattaaaatagtttgactttatttat 209  Q
    |||||||||||||||||| || |||| |||| ||||  ||||||||||||||||    
T  19462814 atagcttatgaaaacaatttacagtttatatgaaaactgtttgactttatttat 19462867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 134 - 171
Target Start/End: Complemental strand, 34290280 - 34290243
Alignment:
Q  134 ttattttcataacttcttcatgatagcttatgaaaaca 171  Q
    |||||||||||| ||||||| |||||||||||||||||    
T  34290280 ttattttcataagttcttcaagatagcttatgaaaaca 34290243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 152 - 216
Target Start/End: Complemental strand, 45205094 - 45205029
Alignment:
Q  152 catgatagcttatgaaaacaatgtatagttgatattaaaatagtttgacttta-tttatcttttat 216  Q
    |||||||||||||||||||||  | ||| | ||||  |||||||||||||||| ||||||||||||    
T  45205094 catgatagcttatgaaaacaacttctagcttatatggaaatagtttgactttattttatcttttat 45205029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 150 - 241
Target Start/End: Complemental strand, 53155291 - 53155200
Alignment:
Q  150 ttcatgatagcttatgaaaacaatgtatagttgatattaaaatagtttgactttatttatcttttattctgaaattgcttatacataagcat 241  Q
    |||||||||||||||||||| | | |||||   |||| ||||||||| ||||||||||||||||| || | |||| ||||||||||||||||    
T  53155291 ttcatgatagcttatgaaaatagtttatagcatatatgaaaatagttcgactttatttatcttttgttataaaatagcttatacataagcat 53155200  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 134 - 179
Target Start/End: Complemental strand, 28423574 - 28423529
Alignment:
Q  134 ttattttcataacttcttcatgatagcttatgaaaacaatgtatag 179  Q
    ||||||||||||  ||| |||||||||||| |||||||||||||||    
T  28423574 ttattttcataaactctacatgatagcttaggaaaacaatgtatag 28423529  T

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Target: chr7 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 132 - 207
Target Start/End: Original strand, 17989047 - 17989122
Alignment:
Q  132 tgttattttcataacttcttcatgatagcttatgaaaacaatgtatagttgatattaaaatagtttgactttattt 207  Q
    ||||||||||||||  |||||| || |||||||||||||||  ||||||| |||| |||| |||||||||||||||    
T  17989047 tgttattttcataagctcttcaggagagcttatgaaaacaaattatagtttatatgaaaacagtttgactttattt 17989122  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 152 - 207
Target Start/End: Complemental strand, 47004113 - 47004058
Alignment:
Q  152 catgatagcttatgaaaacaatgtatagttgatattaaaatagtttgactttattt 207  Q
    |||| |||||||||||||||   ||||||| |||| ||||||||||||||||||||    
T  47004113 catggtagcttatgaaaacagcttatagttcatataaaaatagtttgactttattt 47004058  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 207
Target Start/End: Original strand, 2727409 - 2727459
Alignment:
Q  157 tagcttatgaaaacaatgtatagttgatattaaaatagtttgactttattt 207  Q
    |||||||| |||||||| |||||||||||| |||| |||||| ||||||||    
T  2727409 tagcttataaaaacaatttatagttgatatgaaaagagtttgcctttattt 2727459  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 158 - 214
Target Start/End: Original strand, 9527140 - 9527197
Alignment:
Q  158 agcttatgaaaacaatgtatagttgatattaaaatagtttgactttatt-tatctttt 214  Q
    |||||||||||||||  ||||||| |||| |||| |||||||||||||| ||||||||    
T  9527140 agcttatgaaaacaacttatagtttatatgaaaacagtttgactttattatatctttt 9527197  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 134 - 171
Target Start/End: Complemental strand, 12110404 - 12110367
Alignment:
Q  134 ttattttcataacttcttcatgatagcttatgaaaaca 171  Q
    |||||||||||| ||||||| |||||||||||||||||    
T  12110404 ttattttcataagttcttcaagatagcttatgaaaaca 12110367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 178
Target Start/End: Original strand, 28691861 - 28691905
Alignment:
Q  134 ttattttcataacttcttcatgatagcttatgaaaacaatgtata 178  Q
    ||||||||||||  ||| || ||||||||||||||||||||||||    
T  28691861 ttattttcataagatctccaggatagcttatgaaaacaatgtata 28691905  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 134 - 208
Target Start/End: Original strand, 35394524 - 35394598
Alignment:
Q  134 ttattttcataacttcttcatgatagcttatgaaaacaatgtatagttgatattaaaatagtttgactttattta 208  Q
    |||||||||||| ||||||| ||||||||||||||||| |||||| ||||||| ||||   ||| ||||||||||    
T  35394524 ttattttcataaattcttcaagatagcttatgaaaacagtgtatatttgatatgaaaaccatttcactttattta 35394598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 155 - 214
Target Start/End: Complemental strand, 2321198 - 2321138
Alignment:
Q  155 gatagcttatgaaaa-caatgtatagttgatattaaaatagtttgactttatttatctttt 214  Q
    ||||||||||||||| |||  | ||||| |||| |||||||||||||||||||||||||||    
T  2321198 gatagcttatgaaaaacaagatctagtttatatgaaaatagtttgactttatttatctttt 2321138  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 156 - 214
Target Start/End: Original strand, 24235731 - 24235790
Alignment:
Q  156 atagcttatgaaaacaatgtatagttgatattaaaatagtttgactttat-ttatctttt 214  Q
    |||||||||||||||||  ||||| | ||||| ||||||||||||||||| |||||||||    
T  24235731 atagcttatgaaaacaacttatagcttatattcaaatagtttgactttatattatctttt 24235790  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 152 - 240
Target Start/End: Original strand, 35298521 - 35298612
Alignment:
Q  152 catgatagcttatgaaaacaatgtatagttgatatt-aaaatagtttgacttta-tttatcttttatt-ctgaaattgcttatacataagca 240  Q
    |||||||||||||||||||||  ||||||| ||||| ||||  ||||| ||||| |||||||||| || ||||||| |||||||||||||||    
T  35298521 catgatagcttatgaaaacaacttatagtttatattgaaaactgtttggctttattttatcttttgttactgaaatagcttatacataagca 35298612  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 134 - 204
Target Start/End: Original strand, 42370387 - 42370457
Alignment:
Q  134 ttattttcataacttcttcatgatagcttatgaaaacaatgtatagttgatattaaaatagtttgacttta 204  Q
    |||||| |||||  ||||||||||||||||||| |||| | ||||| | |||  |||||||||||||||||    
T  42370387 ttatttccataaactcttcatgatagcttatgagaacagtttatagctcataaaaaaatagtttgacttta 42370457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 155 - 207
Target Start/End: Original strand, 27728068 - 27728120
Alignment:
Q  155 gatagcttatgaaaacaatgtatagttgatattaaaatagtttgactttattt 207  Q
    ||||||||||||||||||   ||| || |||| ||||||||||||||||||||    
T  27728068 gatagcttatgaaaacaactaatactttatatgaaaatagtttgactttattt 27728120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 155 - 207
Target Start/End: Complemental strand, 29973104 - 29973052
Alignment:
Q  155 gatagcttatgaaaacaatgtatagttgatattaaaatagtttgactttattt 207  Q
    ||||||||||||||||||  ||||| | || | ||||||||||||||||||||    
T  29973104 gatagcttatgaaaacaacttatagcttatgtgaaaatagtttgactttattt 29973052  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 152 - 207
Target Start/End: Complemental strand, 1403022 - 1402967
Alignment:
Q  152 catgatagcttatgaaaacaatgtatagttgatattaaaatagtttgactttattt 207  Q
    |||||||||||||||||||||| ||||| | |||| |||||||||| |||||||||    
T  1403022 catgatagcttatgaaaacaatttatagcttatatgaaaatagtttaactttattt 1402967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 158 - 240
Target Start/End: Complemental strand, 2514722 - 2514638
Alignment:
Q  158 agcttatgaaaacaatgtatagttgatattaaaatagtttgacttta-tttatcttttattct-gaaattgcttatacataagca 240  Q
    |||||||||||| ||  ||||| | |||| ||| ||||||||||||| ||||||||||||| | ||||| |||||||||||||||    
T  2514722 agcttatgaaaataacttatagctcatataaaattagtttgactttattttatcttttattatagaaatagcttatacataagca 2514638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 134 - 171
Target Start/End: Original strand, 34430487 - 34430524
Alignment:
Q  134 ttattttcataacttcttcatgatagcttatgaaaaca 171  Q
    ||||||||||||||||| || |||||||||||||||||    
T  34430487 ttattttcataacttctccaagatagcttatgaaaaca 34430524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 178
Target Start/End: Complemental strand, 26694922 - 26694878
Alignment:
Q  134 ttattttcataacttcttcatgatagcttatgaaaacaatgtata 178  Q
    |||||||||||| ||||||| ||||| ||||||||||||| ||||    
T  26694922 ttattttcataagttcttcaagatagtttatgaaaacaatttata 26694878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 62 - 121
Target Start/End: Original strand, 3290733 - 3290792
Alignment:
Q  62 tgagtttatctacttatataagcacttgtgagttgtgaaactgtttgttagatcttatga 121  Q
    |||||||| |||||  ||||||||||||||| ||||||||||||||| |||| |||||||    
T  3290733 tgagtttacctactagtataagcacttgtgaattgtgaaactgtttgatagaacttatga 3290792  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 156 - 238
Target Start/End: Original strand, 18704084 - 18704167
Alignment:
Q  156 atagcttatgaaaacaatgtatagttgatattaaaatagtttgactttatttatcttttattct-gaaattgcttatacataag 238  Q
    |||||||||||||||||  ||||| | |||| ||||||| ||||||||||||||||||| || | |||||  ||||||||||||    
T  18704084 atagcttatgaaaacaacttatagcttatataaaaatagcttgactttatttatcttttgttatagaaataacttatacataag 18704167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 134 - 217
Target Start/End: Complemental strand, 34205284 - 34205199
Alignment:
Q  134 ttattttcataa-cttcttcatgatagcttatgaaaacaatgtatagttgatattaaaatagtttgacttta-tttatcttttatt 217  Q
    |||||| ||||| ||| |||| ||||||||||||||||||  ||||| | |||| |||||| |||||||||| |||||| ||||||    
T  34205284 ttatttccataagctttttcaagatagcttatgaaaacaacttatagcttatataaaaataatttgactttactttatcctttatt 34205199  T

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Target: chr2 (Bit Score: 35; Significance: 0.00000000009; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 134 - 215
Target Start/End: Original strand, 36863651 - 36863733
Alignment:
Q  134 ttattttcataacttcttcatgatagcttatgaaaacaatgtatagttgatattaaaatagtttgacttta-tttatctttta 215  Q
    ||||||||||||  ||| || ||||||||||||||||||| ||||  | |||| ||||| ||||||||||| |||||||||||    
T  36863651 ttattttcataagctctccaagatagcttatgaaaacaatttataacttatataaaaattgtttgactttattttatctttta 36863733  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 52 - 92
Target Start/End: Original strand, 37419594 - 37419634
Alignment:
Q  52 ttgacttgtatgagtttatctacttatataagcacttgtga 92  Q
    ||||||| | |||||||||||||||||||||||||||||||    
T  37419594 ttgacttatttgagtttatctacttatataagcacttgtga 37419634  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 214
Target Start/End: Original strand, 13736341 - 13736399
Alignment:
Q  156 atagcttatgaaaacaatgtatagttgatattaaaatagtttgactttatttatctttt 214  Q
    ||||||||||||||||   ||||| |||| | ||||||||||||||| |||||||||||    
T  13736341 atagcttatgaaaacagcttatagctgatgtgaaaatagtttgacttcatttatctttt 13736399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 134 - 207
Target Start/End: Complemental strand, 11513942 - 11513869
Alignment:
Q  134 ttattttcataacttcttcatgatagcttatgaaaacaatgtatagttgatattaaaatagtttgactttattt 207  Q
    |||||| || || |||| |||||||||||||||||||||  ||||| | |||| |||| | |||||||||||||    
T  11513942 ttatttccaaaagttctccatgatagcttatgaaaacaacttatagcttatatgaaaacaatttgactttattt 11513869  T

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