View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18190_high_10 (Length: 241)
Name: NF18190_high_10
Description: NF18190
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18190_high_10 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 14 - 241
Target Start/End: Complemental strand, 30665926 - 30665701
Alignment:
| Q |
14 |
catcaagtccgcataagttccttgtgttcttaacacacaacctgcaaaattatgaattatgtaattattatacaagtaaagaagaagatagaggcattaa |
113 |
Q |
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||||||||| |||| |||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30665926 |
catcaagtctgcatcagttccttgtgttcttgacacacagcctgcaaaattatgaattatgtaattattatacaagtaaagaagaagatagaggcattaa |
30665827 |
T |
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| Q |
114 |
tgaatgtatatttgtaatgtgataacatacccttttttagtatttagaaggaaatgaaattcaaagtactatctctcaattgcttagttcaagttgttag |
213 |
Q |
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||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30665826 |
tgaat--atatttgtaatgtgataacatacccttttttagtatatagaaggaaatgaaattcaaagtactatctctcaattgcttagttcaagttgttaa |
30665729 |
T |
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| Q |
214 |
tcaaaatcagatcatacttgtaattggc |
241 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
30665728 |
tcaaaatcagatcatacttgtaattggc |
30665701 |
T |
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