View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18190_high_12 (Length: 236)
Name: NF18190_high_12
Description: NF18190
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18190_high_12 |
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Alignment Details
Target: chr1 (Bit Score: 140; Significance: 2e-73; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 1 - 210
Target Start/End: Complemental strand, 30665523 - 30665317
Alignment:
| Q |
1 |
catgaacaattcaattttcttttctaatttcatctaacaaaagacaaacaaatagaataaaagccacatgaagggttcatactatagacaatactagttt |
100 |
Q |
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| T |
30665523 |
catgaacaattcaatttgcttttctaatttcatctaacaaaagacaaacaaatagaataaaagccacatgaagggttcatactatagacaatactagttt |
30665424 |
T |
|
| Q |
101 |
gttttacggaactatagaatgtaatagataata-aaataaa-ataacatccactacttcattccaattcaaaatacgtatactactcctagttatttgta |
198 |
Q |
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||||||||||||||||||||||||||||||| | ||||||| | ||| ||||||||||||||||||||| ||| |||||||| ||| | || |||| |
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| T |
30665423 |
gttttacggaactatagaatgtaatagataaaataaataaataaaacgtccactacttcattccaattctaaa-----atactactactaataatatgta |
30665329 |
T |
|
| Q |
199 |
tactttttgacc |
210 |
Q |
| |
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|||||||||||| |
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| T |
30665328 |
tactttttgacc |
30665317 |
T |
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