View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18190_high_4 (Length: 374)

Name: NF18190_high_4
Description: NF18190
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18190_high_4
NF18190_high_4
[»] chr1 (21 HSPs)
chr1 (19-241)||(3943582-3943803)
chr1 (19-241)||(41959628-41959849)
chr1 (19-241)||(9589450-9589671)
chr1 (65-241)||(13984447-13984623)
chr1 (239-362)||(13984870-13984993)
chr1 (239-362)||(3943111-3943234)
chr1 (239-362)||(41959129-41959252)
chr1 (239-362)||(9588721-9588844)
chr1 (19-147)||(44227849-44227976)
chr1 (243-362)||(44228112-44228230)
chr1 (273-362)||(1168412-1168499)
chr1 (19-81)||(284548-284609)
chr1 (19-81)||(321841-321902)
chr1 (19-81)||(24771907-24771968)
chr1 (19-60)||(284334-284374)
chr1 (19-60)||(3943061-3943101)
chr1 (19-60)||(9588671-9588711)
chr1 (19-88)||(23045280-23045348)
chr1 (19-60)||(23045515-23045555)
chr1 (19-60)||(27211200-27211240)
chr1 (19-60)||(41959079-41959119)
[»] chr8 (17 HSPs)
chr8 (30-241)||(45278023-45278234)
chr8 (30-241)||(41305773-41305984)
chr8 (65-241)||(10647113-10647289)
chr8 (241-362)||(10646643-10646764)
chr8 (239-362)||(8697777-8697900)
chr8 (239-362)||(40486332-40486455)
chr8 (239-362)||(41307840-41307963)
chr8 (239-362)||(45278580-45278703)
chr8 (19-81)||(11646326-11646387)
chr8 (14-60)||(27034993-27035038)
chr8 (19-81)||(36068295-36068356)
chr8 (19-60)||(3585452-3585492)
chr8 (19-60)||(8697910-8697950)
chr8 (19-60)||(40918965-40919005)
chr8 (19-60)||(41307973-41308013)
chr8 (19-60)||(43275633-43275673)
chr8 (19-60)||(45278713-45278753)
[»] chr3 (23 HSPs)
chr3 (30-241)||(44276786-44276997)
chr3 (19-241)||(19911993-19912214)
chr3 (19-241)||(12095242-12095463)
chr3 (19-223)||(38806178-38806381)
chr3 (239-362)||(12094633-12094756)
chr3 (239-362)||(44277334-44277457)
chr3 (239-362)||(19911560-19911683)
chr3 (254-362)||(38805296-38805404)
chr3 (243-358)||(40931677-40931792)
chr3 (63-228)||(4227369-4227540)
chr3 (88-228)||(4236415-4236562)
chr3 (260-362)||(4226757-4226856)
chr3 (260-362)||(4235801-4235900)
chr3 (19-60)||(38805246-38805286)
chr3 (19-81)||(13365058-13365119)
chr3 (19-81)||(19241669-19241730)
chr3 (239-269)||(19911692-19911722)
chr3 (19-60)||(198856-198896)
chr3 (19-60)||(12094583-12094623)
chr3 (19-60)||(29375139-29375179)
chr3 (19-60)||(36881283-36881323)
chr3 (19-88)||(36881488-36881556)
chr3 (239-268)||(38805396-38805425)
[»] chr6 (8 HSPs)
chr6 (19-241)||(19996323-19996544)
chr6 (226-362)||(19996581-19996717)
chr6 (19-60)||(15064930-15064970)
chr6 (19-81)||(29260407-29260468)
chr6 (19-60)||(1605580-1605620)
chr6 (19-60)||(7761302-7761342)
chr6 (19-88)||(8626690-8626758)
chr6 (19-60)||(29260193-29260233)
[»] chr5 (6 HSPs)
chr5 (19-241)||(15304823-15305044)
chr5 (225-359)||(15305080-15305214)
chr5 (19-60)||(12807089-12807129)
chr5 (19-60)||(15305224-15305264)
chr5 (19-60)||(25773650-25773690)
chr5 (19-60)||(30720728-30720768)
[»] scaffold0257 (3 HSPs)
scaffold0257 (30-241)||(23691-23902)
scaffold0257 (226-362)||(23518-23654)
scaffold0257 (19-60)||(23468-23508)
[»] chr7 (8 HSPs)
chr7 (30-241)||(25059461-25059672)
chr7 (19-241)||(2910860-2911081)
chr7 (239-362)||(25060012-25060135)
chr7 (239-362)||(2911427-2911550)
chr7 (19-60)||(10981509-10981549)
chr7 (19-60)||(25060145-25060185)
chr7 (19-60)||(27813812-27813852)
chr7 (20-60)||(36453360-36453399)
[»] chr2 (7 HSPs)
chr2 (19-241)||(34222059-34222280)
chr2 (239-362)||(34224257-34224380)
chr2 (19-60)||(1102504-1102544)
chr2 (19-60)||(3518909-3518949)
chr2 (19-60)||(12969975-12970015)
chr2 (19-60)||(23366790-23366830)
chr2 (19-60)||(34224390-34224430)
[»] chr4 (13 HSPs)
chr4 (30-230)||(19362019-19362219)
chr4 (25-222)||(20543325-20543521)
chr4 (243-362)||(19361698-19361817)
chr4 (243-362)||(20541512-20541635)
chr4 (19-89)||(44569044-44569113)
chr4 (19-60)||(12071562-12071602)
chr4 (19-60)||(14261045-14261085)
chr4 (19-88)||(14261252-14261320)
chr4 (19-60)||(21310426-21310466)
chr4 (19-88)||(24706248-24706316)
chr4 (19-60)||(25704652-25704692)
chr4 (19-60)||(34324819-34324859)
chr4 (19-60)||(40122721-40122761)
[»] scaffold0054 (1 HSPs)
scaffold0054 (19-81)||(45668-45729)


Alignment Details
Target: chr1 (Bit Score: 211; Significance: 1e-115; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 19 - 241
Target Start/End: Complemental strand, 3943803 - 3943582
Alignment:
Q  19 actccctccgttttcaaaatacatgtccattttagagaaattttttgtttcaaaatacatgtccatttcatagtttaaggatacattttgtctattttac 118  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3943803 actccctccgttt-caaaatacatgtccattttagagaaattttttgtttcaaaatacatgtccatttcatagtttaaggatacattttgtctattttac 3943705  T
Q  119 ccttgtctaccaattaattggattctagattttctccacaataattattttccactaataaatgttgacccaattttaagtagatttactcatgtactct 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  3943704 ccttgtctaccaattaattggattctagattttctccacaataattattttccactaataaatgttgacccaattttaagtagatttactcatgcactct 3943605  T
Q  219 cccaagaaattattttcccatga 241  Q
    |||||||||||||||||||||||    
T  3943604 cccaagaaattattttcccatga 3943582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 19 - 241
Target Start/End: Complemental strand, 41959849 - 41959628
Alignment:
Q  19 actccctccgttttcaaaatacatgtccattttagagaaattttttgtttcaaaatacatgtccatttcatagtttaaggatacattttgtctattttac 118  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41959849 actccctccgttt-caaaatacatgtccattttagagaaattttttgtttcaaaatacatgtccatttcatagtttaaggatacattttgtctattttac 41959751  T
Q  119 ccttgtctaccaattaattggattctagattttctccacaataattattttccactaataaatgttgacccaattttaagtagatttactcatgtactct 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||  |||||    
T  41959750 ccttgtctaccaattaattggattctagattttctccacaataattattttccactaataaatgttgactcaattttaagtagatttactcatacactct 41959651  T
Q  219 cccaagaaattattttcccatga 241  Q
     ||||||||||||||||||||||    
T  41959650 tccaagaaattattttcccatga 41959628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 183; E-Value: 6e-99
Query Start/End: Original strand, 19 - 241
Target Start/End: Complemental strand, 9589671 - 9589450
Alignment:
Q  19 actccctccgttttcaaaatacatgtccattttagagaaattttttgtttcaaaatacatgtccatttcatagtttaaggatacattttgtctattttac 118  Q
    ||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||| || |||||||||||||||||    
T  9589671 actccctccgttt-caaaatacatgtctattttagagaaattttttgtttcaaaatacatatccatttcatagtttaagtatgcattttgtctattttac 9589573  T
Q  119 ccttgtctaccaattaattggattctagattttctccacaataattattttccactaataaatgttgacccaattttaagtagatttactcatgtactct 218  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || |||||    
T  9589572 ccttgtctaccaattaattgaattctagattttctccacaataattattttccactaataaatgttgacctaattttaagtagatttactcctgcactct 9589473  T
Q  219 cccaagaaattattttcccatga 241  Q
    |||||||||||||||||||||||    
T  9589472 cccaagaaattattttcccatga 9589450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 161; E-Value: 9e-86
Query Start/End: Original strand, 65 - 241
Target Start/End: Original strand, 13984447 - 13984623
Alignment:
Q  65 gtttcaaaatacatgtccatttcatagtttaaggatacattttgtctattttacccttgtctaccaattaattggattctagattttctccacaataatt 164  Q
    |||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13984447 gtttcaaaatacatatccatttcatagtttaaggatacatgttgtctattttacccttgtctaccaattaattggattctagattttctccacaataatt 13984546  T
Q  165 attttccactaataaatgttgacccaattttaagtagatttactcatgtactctcccaagaaattattttcccatga 241  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  13984547 attttccactaataaatgttgatccaattttaagtagatttactcatgcactctcccaagaaattattttcccatga 13984623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 239 - 362
Target Start/End: Original strand, 13984870 - 13984993
Alignment:
Q  239 tgaatttaattaattttggtattggtattgagagtaattgtgagatggggtaaataaatgtaaaatagaggaaatcaaagacaagggtataataggaact 338  Q
    |||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  13984870 tgaatttaattaattttggtattggtattgggagtaattatgagatggggtaaataaatgtaaaatggaggaaatcaaagacaagggtataataggaact 13984969  T
Q  339 tttgtgtcaaactagcttgtcctt 362  Q
    ||||||||||||||||||||||||    
T  13984970 tttgtgtcaaactagcttgtcctt 13984993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 239 - 362
Target Start/End: Complemental strand, 3943234 - 3943111
Alignment:
Q  239 tgaatttaattaattttggtattggtattgagagtaattgtgagatggggtaaataaatgtaaaatagaggaaatcaaagacaagggtataataggaact 338  Q
    |||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  3943234 tgaatttaattaattttggtattggtattgggagtaattatgagatggggtaaataaatgtaaaatggaggaaatcaaagacaagggtataataggaact 3943135  T
Q  339 tttgtgtcaaactagcttgtcctt 362  Q
    ||||||||||| ||||||||||||    
T  3943134 tttgtgtcaaattagcttgtcctt 3943111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 239 - 362
Target Start/End: Complemental strand, 41959252 - 41959129
Alignment:
Q  239 tgaatttaattaattttggtattggtattgagagtaattgtgagatggggtaaataaatgtaaaatagaggaaatcaaagacaagggtataataggaact 338  Q
    |||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||    
T  41959252 tgaatttaattaattttggtattggtattgggagtaattatgagatggggtaaataaatgtaaaatggaggaaatcaaagacaagggtataatatgaact 41959153  T
Q  339 tttgtgtcaaactagcttgtcctt 362  Q
    ||||||||||||||||||||||||    
T  41959152 tttgtgtcaaactagcttgtcctt 41959129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 239 - 362
Target Start/End: Complemental strand, 9588844 - 9588721
Alignment:
Q  239 tgaatttaattaattttggtattggtattgagagtaattgtgagatggggtaaataaatgtaaaatagaggaaatcaaagacaagggtataataggaact 338  Q
    |||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||    
T  9588844 tgaatttaattaattttggtattggtattgggagtaattatgagatggggtaaataaatgtaaaatggagaaaatcaaagacaagggtataataggaact 9588745  T
Q  339 tttgtgtcaaactagcttgtcctt 362  Q
    ||||||||||| ||| ||||||||    
T  9588744 tttgtgtcaaaatagattgtcctt 9588721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 19 - 147
Target Start/End: Original strand, 44227849 - 44227976
Alignment:
Q  19 actccctccgttttcaaaatacatgtccattttagagaaattttttgtttcaaaatacatgtccatttcatagtttaaggatacattttgtctattttac 118  Q
    ||||||||||||| ||||||||||||||||||| |||||||||||||||||||||| ||||||  ||| |||||||||||||||||||||||||||||||    
T  44227849 actccctccgttt-caaaatacatgtccattttggagaaattttttgtttcaaaatgcatgtcattttgatagtttaaggatacattttgtctattttac 44227947  T
Q  119 ccttgtctaccaattaattggattctaga 147  Q
    |||||| |||||| |||||||||||||||    
T  44227948 ccttgtataccaactaattggattctaga 44227976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 243 - 362
Target Start/End: Original strand, 44228112 - 44228230
Alignment:
Q  243 tttaattaattttggtattggtattgagagtaattgtgagatggggtaaataaatgtaaaatagaggaaatcaaagacaagggtataataggaacttttg 342  Q
    ||||||||| ||||||||||||||||  ||| ||| | ||||||||||||||||||||||||  ||||||| ||| |||||||||||||||||||||||     
T  44228112 tttaattaaatttggtattggtattggaagtgattattagatggggtaaataaatgtaaaatgaaggaaataaaaaacaagggtataataggaactttta 44228211  T
Q  343 tgtcaaactagcttgtcctt 362  Q
    |||| | |||||||||||||    
T  44228212 tgtc-agctagcttgtcctt 44228230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 273 - 362
Target Start/End: Complemental strand, 1168499 - 1168412
Alignment:
Q  273 taattgtgagatggggtaaataaatgtaaaatagaggaaatcaaagacaagggtataataggaacttttgtgtcaaactagcttgtcctt 362  Q
    ||||| ||||| |||||||||||||  ||||| |||||||||||||||||||||| | || |||||||||||||||| ||||||||||||    
T  1168499 taattatgagacggggtaaataaat--aaaatggaggaaatcaaagacaagggtaaactatgaacttttgtgtcaaaatagcttgtcctt 1168412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 81
Target Start/End: Complemental strand, 284609 - 284548
Alignment:
Q  19 actccctccgttttcaaaatacatgtccattttagagaaattttttgtttcaaaatacatgtc 81  Q
    ||||||||||||| || ||||| ||||||||||||||||   |||||||||||||||| ||||    
T  284609 actccctccgttt-cataatacttgtccattttagagaataattttgtttcaaaatacttgtc 284548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 81
Target Start/End: Complemental strand, 321902 - 321841
Alignment:
Q  19 actccctccgttttcaaaatacatgtccattttagagaaattttttgtttcaaaatacatgtc 81  Q
    ||||||||||||| || ||||| ||||||||||||||||  ||||||||||| ||||| ||||    
T  321902 actccctccgttt-cataatacttgtccattttagagaatatttttgtttcacaatacttgtc 321841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 81
Target Start/End: Original strand, 24771907 - 24771968
Alignment:
Q  19 actccctccgttttcaaaatacatgtccattttagagaaattttttgtttcaaaatacatgtc 81  Q
    ||||||||||||| || ||||| ||||||||||||||||   |||||||||| ||||||||||    
T  24771907 actccctccgttt-cataatacttgtccattttagagaataattttgtttcacaatacatgtc 24771968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 60
Target Start/End: Original strand, 284334 - 284374
Alignment:
Q  19 actccctccgttttcaaaatacatgtccattttagagaaatt 60  Q
    ||||||||||||| ||||||||||||||||||| ||||||||    
T  284334 actccctccgttt-caaaatacatgtccattttggagaaatt 284374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 60
Target Start/End: Original strand, 3943061 - 3943101
Alignment:
Q  19 actccctccgttttcaaaatacatgtccattttagagaaatt 60  Q
    ||||||||||||| ||||||||||||||||||| ||||||||    
T  3943061 actccctccgttt-caaaatacatgtccattttggagaaatt 3943101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 60
Target Start/End: Original strand, 9588671 - 9588711
Alignment:
Q  19 actccctccgttttcaaaatacatgtccattttagagaaatt 60  Q
    ||||||||||||| ||||||||||||||||||| ||||||||    
T  9588671 actccctccgttt-caaaatacatgtccattttggagaaatt 9588711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 88
Target Start/End: Original strand, 23045280 - 23045348
Alignment:
Q  19 actccctccgttttcaaaatacatgtccattttagagaaattttttgtttcaaaatacatgtccatttca 88  Q
    ||||||||||||| || ||||| ||||||||||||||||   |||||||||| ||||| ||||| |||||    
T  23045280 actccctccgttt-cataatacttgtccattttagagaataattttgtttcacaatacttgtccctttca 23045348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 60
Target Start/End: Complemental strand, 23045555 - 23045515
Alignment:
Q  19 actccctccgttttcaaaatacatgtccattttagagaaatt 60  Q
    ||||||||||||| ||||||||||||||||||| ||||||||    
T  23045555 actccctccgttt-caaaatacatgtccattttggagaaatt 23045515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 60
Target Start/End: Complemental strand, 27211240 - 27211200
Alignment:
Q  19 actccctccgttttcaaaatacatgtccattttagagaaatt 60  Q
    ||||||||||||| ||||||||||||||||||| ||||||||    
T  27211240 actccctccgttt-caaaatacatgtccattttggagaaatt 27211200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 60
Target Start/End: Original strand, 41959079 - 41959119
Alignment:
Q  19 actccctccgttttcaaaatacatgtccattttagagaaatt 60  Q
    ||||||||||||| ||||||||||||||||||| ||||||||    
T  41959079 actccctccgttt-caaaatacatgtccattttggagaaatt 41959119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 208; Significance: 1e-114; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 30 - 241
Target Start/End: Original strand, 45278023 - 45278234
Alignment:
Q  30 tttcaaaatacatgtccattttagagaaattttttgtttcaaaatacatgtccatttcatagtttaaggatacattttgtctattttacccttgtctacc 129  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45278023 tttcaaaatacatgtccattttagagaaattttttgtttcaaaatacatgtccatttcatagtttaaggatacattttgtctattttacccttgtctacc 45278122  T
Q  130 aattaattggattctagattttctccacaataattattttccactaataaatgttgacccaattttaagtagatttactcatgtactctcccaagaaatt 229  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  45278123 aattaattggattctagattttctccacaataattattttccactaataaatgttgacccaattttaagtagatttactcatgcactctcccaagaaatt 45278222  T
Q  230 attttcccatga 241  Q
    ||||||||||||    
T  45278223 attttcccatga 45278234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 30 - 241
Target Start/End: Original strand, 41305773 - 41305984
Alignment:
Q  30 tttcaaaatacatgtccattttagagaaattttttgtttcaaaatacatgtccatttcatagtttaaggatacattttgtctattttacccttgtctacc 129  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  41305773 tttcaaaatacatgtccattttagagaaattttttgtttcaaaatacatgtccatttcatagtttaaggatatattttgtctattttacccttgtctacc 41305872  T
Q  130 aattaattggattctagattttctccacaataattattttccactaataaatgttgacccaattttaagtagatttactcatgtactctcccaagaaatt 229  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||    
T  41305873 aattaattggattctagattttctccacaataattattttccactaataaatgttgacccaattttaagtagatttactcatgcactctcctaagaaatt 41305972  T
Q  230 attttcccatga 241  Q
    ||||||||||||    
T  41305973 attttcccatga 41305984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 65 - 241
Target Start/End: Complemental strand, 10647289 - 10647113
Alignment:
Q  65 gtttcaaaatacatgtccatttcatagtttaaggatacattttgtctattttacccttgtctaccaattaattggattctagattttctccacaataatt 164  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10647289 gtttcaaaatacatgtccatttcatagtttaaggatacattttgtctattttacccttgtctaccaattaattggattctagattttctccacaataatt 10647190  T
Q  165 attttccactaataaatgttgacccaattttaagtagatttactcatgtactctcccaagaaattattttcccatga 241  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||    
T  10647189 attttccactaataaatgttgacccaattttaagtagatttactcatgcactctcctaagaaattattttcccatga 10647113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 241 - 362
Target Start/End: Complemental strand, 10646764 - 10646643
Alignment:
Q  241 aatttaattaattttggtattggtattgagagtaattgtgagatggggtaaataaatgtaaaatagaggaaatcaaagacaagggtataataggaacttt 340  Q
    |||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  10646764 aatttaattaattttggtattggtattgggagtaattatgagatggggtaaataaatgtaaaatggaggaaatcaaagacaagggtataataggaacttt 10646665  T
Q  341 tgtgtcaaactagcttgtcctt 362  Q
    ||||||||||||||||||||||    
T  10646664 tgtgtcaaactagcttgtcctt 10646643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 239 - 362
Target Start/End: Original strand, 8697777 - 8697900
Alignment:
Q  239 tgaatttaattaattttggtattggtattgagagtaattgtgagatggggtaaataaatgtaaaatagaggaaatcaaagacaagggtataataggaact 338  Q
    |||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  8697777 tgaatttaattaattttggtattggtattgggagtaattatgagatggggtaaataaatgtaaaatggaggaaatcaaagacaagggtataataggaact 8697876  T
Q  339 tttgtgtcaaactagcttgtcctt 362  Q
    ||||||||||||||| ||||||||    
T  8697877 tttgtgtcaaactagtttgtcctt 8697900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 239 - 362
Target Start/End: Original strand, 40486332 - 40486455
Alignment:
Q  239 tgaatttaattaattttggtattggtattgagagtaattgtgagatggggtaaataaatgtaaaatagaggaaatcaaagacaagggtataataggaact 338  Q
    |||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  40486332 tgaatttaattaattttggtattggtattgggagtaattatgagatggggtaaataaatgtaaaatggaggaaatcaaagacaagggtataataggaact 40486431  T
Q  339 tttgtgtcaaactagcttgtcctt 362  Q
    ||||||||||| ||||||||||||    
T  40486432 tttgtgtcaaattagcttgtcctt 40486455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 239 - 362
Target Start/End: Original strand, 41307840 - 41307963
Alignment:
Q  239 tgaatttaattaattttggtattggtattgagagtaattgtgagatggggtaaataaatgtaaaatagaggaaatcaaagacaagggtataataggaact 338  Q
    |||||||||||||||||| ||||||||||| |||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  41307840 tgaatttaattaattttgatattggtattgggagtaattatgagatggggtaaataaatgtaaaatggaggaaatcaaagacaagggtataataggaact 41307939  T
Q  339 tttgtgtcaaactagcttgtcctt 362  Q
    ||||||||||||||||||||||||    
T  41307940 tttgtgtcaaactagcttgtcctt 41307963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 239 - 362
Target Start/End: Original strand, 45278580 - 45278703
Alignment:
Q  239 tgaatttaattaattttggtattggtattgagagtaattgtgagatggggtaaataaatgtaaaatagaggaaatcaaagacaagggtataataggaact 338  Q
    |||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  45278580 tgaatttaattaattttggtattggtattgggagtaattatgagatggggtaaataaatgtaaaatggaggaaatcaaagacaagggtataataggaact 45278679  T
Q  339 tttgtgtcaaactagcttgtcctt 362  Q
    ||||||||||| ||||||||||||    
T  45278680 tttgtgtcaaattagcttgtcctt 45278703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 81
Target Start/End: Original strand, 11646326 - 11646387
Alignment:
Q  19 actccctccgttttcaaaatacatgtccattttagagaaattttttgtttcaaaatacatgtc 81  Q
    ||||||||||||| || ||||| ||||||||||||||||   |||||||||||||||| ||||    
T  11646326 actccctccgttt-cataatacttgtccattttagagaataattttgtttcaaaatacttgtc 11646387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 60
Target Start/End: Original strand, 27034993 - 27035038
Alignment:
Q  14 tcatcactccctccgttttcaaaatacatgtccattttagagaaatt 60  Q
    |||| ||||||||||||| ||||||||||||||||||| ||||||||    
T  27034993 tcattactccctccgttt-caaaatacatgtccattttggagaaatt 27035038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 81
Target Start/End: Complemental strand, 36068356 - 36068295
Alignment:
Q  19 actccctccgttttcaaaatacatgtccattttagagaaattttttgtttcaaaatacatgtc 81  Q
    ||||||||||||| || ||||| ||||||||||||||||   |||||||||||||||| ||||    
T  36068356 actccctccgttt-cataatacttgtccattttagagaataattttgtttcaaaatacttgtc 36068295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 60
Target Start/End: Original strand, 3585452 - 3585492
Alignment:
Q  19 actccctccgttttcaaaatacatgtccattttagagaaatt 60  Q
    ||||||||||||| ||||||||||||||||||| ||||||||    
T  3585452 actccctccgttt-caaaatacatgtccattttggagaaatt 3585492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 60
Target Start/End: Complemental strand, 8697950 - 8697910
Alignment:
Q  19 actccctccgttttcaaaatacatgtccattttagagaaatt 60  Q
    ||||||||||||| ||||||||||||||||||| ||||||||    
T  8697950 actccctccgttt-caaaatacatgtccattttggagaaatt 8697910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 60
Target Start/End: Complemental strand, 40919005 - 40918965
Alignment:
Q  19 actccctccgttttcaaaatacatgtccattttagagaaatt 60  Q
    ||||||||||||| ||||||||||||||||||| ||||||||    
T  40919005 actccctccgttt-caaaatacatgtccattttggagaaatt 40918965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 60
Target Start/End: Complemental strand, 41308013 - 41307973
Alignment:
Q  19 actccctccgttttcaaaatacatgtccattttagagaaatt 60  Q
    ||||||||||||| ||||||||||||||||||| ||||||||    
T  41308013 actccctccgttt-caaaatacatgtccattttggagaaatt 41307973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 60
Target Start/End: Complemental strand, 43275673 - 43275633
Alignment:
Q  19 actccctccgttttcaaaatacatgtccattttagagaaatt 60  Q
    ||||||||||||| ||||||||||||||||||| ||||||||    
T  43275673 actccctccgttt-caaaatacatgtccattttggagaaatt 43275633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 60
Target Start/End: Complemental strand, 45278753 - 45278713
Alignment:
Q  19 actccctccgttttcaaaatacatgtccattttagagaaatt 60  Q
    ||||||||||||| ||||||||||||||||||| ||||||||    
T  45278753 actccctccgttt-caaaatacatgtccattttggagaaatt 45278713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 208; Significance: 1e-114; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 30 - 241
Target Start/End: Original strand, 44276786 - 44276997
Alignment:
Q  30 tttcaaaatacatgtccattttagagaaattttttgtttcaaaatacatgtccatttcatagtttaaggatacattttgtctattttacccttgtctacc 129  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44276786 tttcaaaatacatgtccattttagagaaattttttgtttcaaaatacatgtccatttcatagtttaaggatacattttgtctattttacccttgtctacc 44276885  T
Q  130 aattaattggattctagattttctccacaataattattttccactaataaatgttgacccaattttaagtagatttactcatgtactctcccaagaaatt 229  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  44276886 aattaattggattctagattttctccacaataattattttccactaataaatgttgacccaattttaagtagatttactcatgcactctcccaagaaatt 44276985  T
Q  230 attttcccatga 241  Q
    ||||||||||||    
T  44276986 attttcccatga 44276997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 19 - 241
Target Start/End: Complemental strand, 19912214 - 19911993
Alignment:
Q  19 actccctccgttttcaaaatacatgtccattttagagaaattttttgtttcaaaatacatgtccatttcatagtttaaggatacattttgtctattttac 118  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19912214 actccctccgttt-caaaatacatgtccattttagagaaattttttgtttcaaaatacatgtccatttcatagtttaaggatacattttgtctattttac 19912116  T
Q  119 ccttgtctaccaattaattggattctagattttctccacaataattattttccactaataaatgttgacccaattttaagtagatttactcatgtactct 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  19912115 ccttgtctaccaattaattggattctagattttctccacaataattattttccactaataaatgttgacccaattttaagtagatttactcatgcactct 19912016  T
Q  219 cccaagaaattattttcccatga 241  Q
     ||||||||||||||||||||||    
T  19912015 tccaagaaattattttcccatga 19911993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 19 - 241
Target Start/End: Complemental strand, 12095463 - 12095242
Alignment:
Q  19 actccctccgttttcaaaatacatgtccattttagagaaattttttgtttcaaaatacatgtccatttcatagtttaaggatacattttgtctattttac 118  Q
    ||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||    
T  12095463 actccctccgttt-caaaatatatgtccattttagagaaattttttgtttcaaaatacatgtccatttcatagtttaaggatgcattttatctattttac 12095365  T
Q  119 ccttgtctaccaattaattggattctagattttctccacaataattattttccactaataaatgttgacccaattttaagtagatttactcatgtactct 218  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||    
T  12095364 ccttgtctaccaattaattggattctagattttcttcacaataattattttccactaataaatgtagacccaattttaagtagatttactcatgcactct 12095265  T
Q  219 cccaagaaattattttcccatga 241  Q
    |||||||||||||||||||||||    
T  12095264 cccaagaaattattttcccatga 12095242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 19 - 223
Target Start/End: Complemental strand, 38806381 - 38806178
Alignment:
Q  19 actccctccgttttcaaaatacatgtccattttagagaaattttttgtttcaaaatacatgtccatttcatagtttaaggatacattttgtctattttac 118  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  38806381 actccctccgttt-caaaatacatgtccattttagagaaattttttgtttcaaaatacatgtctatttcatagtttaaggatacattttgtctattttac 38806283  T
Q  119 ccttgtctaccaattaattggattctagattttctccacaataattattttccactaataaatgttgacccaattttaagtagatttactcatgtactct 218  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  38806282 ccttgtctaccaattaattggattctagattttctccataataattattttccactaataaatgttgacccaattttaagtagatttactcatgcactct 38806183  T
Q  219 cccaa 223  Q
    |||||    
T  38806182 cccaa 38806178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 239 - 362
Target Start/End: Complemental strand, 12094756 - 12094633
Alignment:
Q  239 tgaatttaattaattttggtattggtattgagagtaattgtgagatggggtaaataaatgtaaaatagaggaaatcaaagacaagggtataataggaact 338  Q
    |||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12094756 tgaatttaattaattttggtattggtattgggagtaattatgagatggggtaaataaatgtaaaatagaggaaatcaaagacaagggtataataggaact 12094657  T
Q  339 tttgtgtcaaactagcttgtcctt 362  Q
    ||||||||||||||||||||||||    
T  12094656 tttgtgtcaaactagcttgtcctt 12094633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 239 - 362
Target Start/End: Original strand, 44277334 - 44277457
Alignment:
Q  239 tgaatttaattaattttggtattggtattgagagtaattgtgagatggggtaaataaatgtaaaatagaggaaatcaaagacaagggtataataggaact 338  Q
    |||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||    
T  44277334 tgaatttaattaattttggtattggtattgggagtaattatgagatggggtaaataaatgtaaaatggagaaaatcaaagacaagggtataataggaact 44277433  T
Q  339 tttgtgtcaaactagcttgtcctt 362  Q
    ||||||||||||||||||||||||    
T  44277434 tttgtgtcaaactagcttgtcctt 44277457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 239 - 362
Target Start/End: Complemental strand, 19911683 - 19911560
Alignment:
Q  239 tgaatttaattaattttggtattggtattgagagtaattgtgagatggggtaaataaatgtaaaatagaggaaatcaaagacaagggtataataggaact 338  Q
    |||||||||||||||||||||||||||||| |||||||| |||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  19911683 tgaatttaattaattttggtattggtattgggagtaattatgaggtggggtaaataaatgtaaaatggaggaaatcaaagacaagggtataataggaact 19911584  T
Q  339 tttgtgtcaaactagcttgtcctt 362  Q
    |||||||||||||| |||||||||    
T  19911583 tttgtgtcaaactaacttgtcctt 19911560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 254 - 362
Target Start/End: Complemental strand, 38805404 - 38805296
Alignment:
Q  254 ttggtattggtattgagagtaattgtgagatggggtaaataaatgtaaaatagaggaaatcaaagacaagggtataataggaacttttgtgtcaaactag 353  Q
    ||||||||||||||| |||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  38805404 ttggtattggtattgggagtaattatgagatggggtaaataaatgtaaaatggaggaaatcaaagacaagggtataataggaacttttgtgtcaaactag 38805305  T
Q  354 cttgtcctt 362  Q
    |||||||||    
T  38805304 cttgtcctt 38805296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 243 - 358
Target Start/End: Complemental strand, 40931792 - 40931677
Alignment:
Q  243 tttaattaattttggtattggtattgagagtaattgtgagatggggtaaataaatgtaaaatagaggaaatcaaagacaagggtataataggaacttttg 342  Q
    |||||||||||||||||||||||||| |||||| | ||||||||||||||||||  |||||| |||||||||||||||||| ||||||||||||||||||    
T  40931792 tttaattaattttggtattggtattgggagtaactatgagatggggtaaataaacataaaatggaggaaatcaaagacaagagtataataggaacttttg 40931693  T
Q  343 tgtcaaactagcttgt 358  Q
    ||| || |||||||||    
T  40931692 tgttaatctagcttgt 40931677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 63 - 228
Target Start/End: Complemental strand, 4227540 - 4227369
Alignment:
Q  63 ttgtttcaaaatacatgtccatttcatagtttaaggatacattttgtctattttacccttgtctaccaattaattggattctagattttctccacaataa 162  Q
    |||||| |||||||||||   ||| ||| |||||||||||||||||| ||||||||||||| |||| |||||||||||||||| ||||||||||||||||    
T  4227540 ttgtttaaaaatacatgtatttttgataatttaaggatacattttgtatattttacccttgcctac-aattaattggattctaaattttctccacaataa 4227442  T
Q  163 ttattttccactaataaa-------tgttgacccaattttaagtagatttactcatgtactctcccaagaaat 228  Q
    ||||||||||||||||||       |||||  |||||||||||| |||||| ||||| | |||||||||||||    
T  4227441 ttattttccactaataaatataatgtgttggtccaattttaagtggatttattcatgcagtctcccaagaaat 4227369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 88 - 228
Target Start/End: Complemental strand, 4236562 - 4236415
Alignment:
Q  88 atagtttaaggatacattttgtctattttacccttgtctaccaattaattggattctagattttctccacaataattattttccactaataaa------- 180  Q
    |||||||||||||||||||| | ||||||||||||| ||  ||||||||||||||||| ||||||||||||||||||||||||||||||||||           
T  4236562 atagtttaaggatacattttatatattttacccttgccttgcaattaattggattctaaattttctccacaataattattttccactaataaatataatg 4236463  T
Q  181 tgttgacccaattttaagtagatttactcatgtactctcccaagaaat 228  Q
    |||||  |||||||||||| |||||| ||||| |||||||||||||||    
T  4236462 tgttggtccaattttaagtggatttattcatgcactctcccaagaaat 4236415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 260 - 362
Target Start/End: Complemental strand, 4226856 - 4226757
Alignment:
Q  260 ttggtattgagagtaattgtgagatggggtaaataaatgtaaaatagaggaaatcaaagacaagggtataataggaacttttgtgtcaaactagcttgtc 359  Q
    |||||||||||||||||| |||||||||||||||||||  ||||| |||||||||||| ||||||||||||||||||| ||||||||||||||| |||||    
T  4226856 ttggtattgagagtaattatgagatggggtaaataaat--aaaatggaggaaatcaaacacaagggtataataggaac-tttgtgtcaaactagtttgtc 4226760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 260 - 362
Target Start/End: Complemental strand, 4235900 - 4235801
Alignment:
Q  260 ttggtattgagagtaattgtgagatggggtaaataaatgtaaaatagaggaaatcaaagacaagggtataataggaacttttgtgtcaaactagcttgtc 359  Q
    |||||||||||||||||| |||||| ||||||||||||  ||||| |||||||||||| ||||||||||||||||||| ||||| |||||||||||||||    
T  4235900 ttggtattgagagtaattatgagattgggtaaataaat--aaaatggaggaaatcaaacacaagggtataataggaac-tttgtatcaaactagcttgtc 4235804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 19 - 60
Target Start/End: Original strand, 38805246 - 38805286
Alignment:
Q  19 actccctccgttttcaaaatacatgtccattttagagaaatt 60  Q
    |||||||||||||| |||||||||||||||||||||||||||    
T  38805246 actccctccgtttt-aaaatacatgtccattttagagaaatt 38805286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 81
Target Start/End: Complemental strand, 13365119 - 13365058
Alignment:
Q  19 actccctccgttttcaaaatacatgtccattttagagaaattttttgtttcaaaatacatgtc 81  Q
    ||||||||||||| || ||||| ||||||||||||||||   |||||||||||||||| ||||    
T  13365119 actccctccgttt-cataatacttgtccattttagagaataattttgtttcaaaatacttgtc 13365058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 81
Target Start/End: Original strand, 19241669 - 19241730
Alignment:
Q  19 actccctccgttttcaaaatacatgtccattttagagaaattttttgtttcaaaatacatgtc 81  Q
    ||||||||||||| || ||||| ||||||||||||||||   |||||||||||||||| ||||    
T  19241669 actccctccgttt-cataatacttgtccattttagagaataattttgtttcaaaatacttgtc 19241730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 239 - 269
Target Start/End: Complemental strand, 19911722 - 19911692
Alignment:
Q  239 tgaatttaattaattttggtattggtattga 269  Q
    |||||||||||||||||||||||||||||||    
T  19911722 tgaatttaattaattttggtattggtattga 19911692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 60
Target Start/End: Original strand, 198856 - 198896
Alignment:
Q  19 actccctccgttttcaaaatacatgtccattttagagaaatt 60  Q
    ||||||||||||| ||||||||||||||||||| ||||||||    
T  198856 actccctccgttt-caaaatacatgtccattttggagaaatt 198896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 60
Target Start/End: Original strand, 12094583 - 12094623
Alignment:
Q  19 actccctccgttttcaaaatacatgtccattttagagaaatt 60  Q
    ||||||||||||| ||||||||||||||||||| ||||||||    
T  12094583 actccctccgttt-caaaatacatgtccattttggagaaatt 12094623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 60
Target Start/End: Original strand, 29375139 - 29375179
Alignment:
Q  19 actccctccgttttcaaaatacatgtccattttagagaaatt 60  Q
    ||||||||||||| ||||||||||||||||||| ||||||||    
T  29375139 actccctccgttt-caaaatacatgtccattttggagaaatt 29375179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 60
Target Start/End: Original strand, 36881283 - 36881323
Alignment:
Q  19 actccctccgttttcaaaatacatgtccattttagagaaatt 60  Q
    ||||||||||||| ||||||||||||||||||| ||||||||    
T  36881283 actccctccgttt-caaaatacatgtccattttggagaaatt 36881323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 88
Target Start/End: Complemental strand, 36881556 - 36881488
Alignment:
Q  19 actccctccgttttcaaaatacatgtccattttagagaaattttttgtttcaaaatacatgtccatttca 88  Q
    ||||||||||||| || ||||| ||||||||||||||||   |||||||||| ||||| ||||| |||||    
T  36881556 actccctccgttt-cataatacttgtccattttagagaataattttgtttcacaatacttgtccctttca 36881488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 268
Target Start/End: Complemental strand, 38805425 - 38805396
Alignment:
Q  239 tgaatttaattaattttggtattggtattg 268  Q
    ||||||||||||||||||||||||||||||    
T  38805425 tgaatttaattaattttggtattggtattg 38805396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 207; Significance: 1e-113; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 19 - 241
Target Start/End: Original strand, 19996323 - 19996544
Alignment:
Q  19 actccctccgttttcaaaatacatgtccattttagagaaattttttgtttcaaaatacatgtccatttcatagtttaaggatacattttgtctattttac 118  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19996323 actccctccgttt-caaaatacatgtccattttagagaaattttttgtttcaaaatacatgtccatttcatagtttaaggatacattttgtctattttac 19996421  T
Q  119 ccttgtctaccaattaattggattctagattttctccacaataattattttccactaataaatgttgacccaattttaagtagatttactcatgtactct 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||    
T  19996422 ccttgtctaccaattaattggattctagattttctccacaataattattttccactaataaatattgacccaattttaagtagatttactcatgcactct 19996521  T
Q  219 cccaagaaattattttcccatga 241  Q
    |||||||||||||||||||||||    
T  19996522 cccaagaaattattttcccatga 19996544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 226 - 362
Target Start/End: Original strand, 19996581 - 19996717
Alignment:
Q  226 aattattttcccatgaatttaattaattttggtattggtattgagagtaattgtgagatggggtaaataaatgtaaaatagaggaaatcaaagacaaggg 325  Q
    ||||||||||| ||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| ||||||||||||||||| ||    
T  19996581 aattattttcctatgaatttaattaattttggtattggtattgggagtaattatgagatggggtaaataaatgtaaaatggaggaaatcaaagacaaagg 19996680  T
Q  326 tataataggaacttttgtgtcaaactagcttgtcctt 362  Q
    |||||||||||||||||||||||||||||||||||||    
T  19996681 tataataggaacttttgtgtcaaactagcttgtcctt 19996717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 19 - 60
Target Start/End: Complemental strand, 15064970 - 15064930
Alignment:
Q  19 actccctccgttttcaaaatacatgtccattttagagaaatt 60  Q
    ||||||||||||| ||||||||||||||||||||||||||||    
T  15064970 actccctccgttt-caaaatacatgtccattttagagaaatt 15064930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 81
Target Start/End: Complemental strand, 29260468 - 29260407
Alignment:
Q  19 actccctccgttttcaaaatacatgtccattttagagaaattttttgtttcaaaatacatgtc 81  Q
    ||||||||||||| || ||||| ||||||||||||||||   |||||||||||||||| ||||    
T  29260468 actccctccgttt-cataatacttgtccattttagagaataattttgtttcaaaatacttgtc 29260407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 60
Target Start/End: Original strand, 1605580 - 1605620
Alignment:
Q  19 actccctccgttttcaaaatacatgtccattttagagaaatt 60  Q
    ||||||||||||| ||||||||||||||||||| ||||||||    
T  1605580 actccctccgttt-caaaatacatgtccattttggagaaatt 1605620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 60
Target Start/End: Original strand, 7761302 - 7761342
Alignment:
Q  19 actccctccgttttcaaaatacatgtccattttagagaaatt 60  Q
    ||||||||||||| ||||||||||||||||||| ||||||||    
T  7761302 actccctccgttt-caaaatacatgtccattttggagaaatt 7761342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 88
Target Start/End: Complemental strand, 8626758 - 8626690
Alignment:
Q  19 actccctccgttttcaaaatacatgtccattttagagaaattttttgtttcaaaatacatgtccatttca 88  Q
    ||||||||||||| || ||||| ||||||||||||||||   |||||||||| ||||| ||||| |||||    
T  8626758 actccctccgttt-cataatacttgtccattttagagaataattttgtttcacaatacttgtccctttca 8626690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 60
Target Start/End: Original strand, 29260193 - 29260233
Alignment:
Q  19 actccctccgttttcaaaatacatgtccattttagagaaatt 60  Q
    ||||||||||||| ||||||||||||||||||| ||||||||    
T  29260193 actccctccgttt-caaaatacatgtccattttggagaaatt 29260233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 207; Significance: 1e-113; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 19 - 241
Target Start/End: Original strand, 15304823 - 15305044
Alignment:
Q  19 actccctccgttttcaaaatacatgtccattttagagaaattttttgtttcaaaatacatgtccatttcatagtttaaggatacattttgtctattttac 118  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15304823 actccctccgtttt-aaaatacatgtccattttagagaaattttttgtttcaaaatacatgtccatttcatagtttaaggatacattttgtctattttac 15304921  T
Q  119 ccttgtctaccaattaattggattctagattttctccacaataattattttccactaataaatgttgacccaattttaagtagatttactcatgtactct 218  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  15304922 ccttatctaccaattaattggattctagattttctccacaataattattttccactaataaatgttgacccaattttaagtagatttactcatgcactct 15305021  T
Q  219 cccaagaaattattttcccatga 241  Q
    |||||||||||||||||||||||    
T  15305022 cccaagaaattattttcccatga 15305044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 225 - 359
Target Start/End: Original strand, 15305080 - 15305214
Alignment:
Q  225 aaattattttcccatgaatttaattaattttggtattggtattgagagtaattgtgagatggggtaaataaatgtaaaatagaggaaatcaaagacaagg 324  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| || ||||||||||||||||    
T  15305080 aaattattttcccatgaatttaattaattttggtattggtattgggagtaattatgagatggggtaaataaatgtaaaatggatgaaatcaaagacaagg 15305179  T
Q  325 gtataataggaacttttgtgtcaaactagcttgtc 359  Q
    ||||||||||||||||||||||||||| |||||||    
T  15305180 gtataataggaacttttgtgtcaaacttgcttgtc 15305214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 60
Target Start/End: Complemental strand, 12807129 - 12807089
Alignment:
Q  19 actccctccgttttcaaaatacatgtccattttagagaaatt 60  Q
    ||||||||||||| ||||||||||||||||||| ||||||||    
T  12807129 actccctccgttt-caaaatacatgtccattttggagaaatt 12807089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 60
Target Start/End: Complemental strand, 15305264 - 15305224
Alignment:
Q  19 actccctccgttttcaaaatacatgtccattttagagaaatt 60  Q
    ||||||||||||| ||||||||||||||||||| ||||||||    
T  15305264 actccctccgttt-caaaatacatgtccattttggagaaatt 15305224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 60
Target Start/End: Original strand, 25773650 - 25773690
Alignment:
Q  19 actccctccgttttcaaaatacatgtccattttagagaaatt 60  Q
    ||||||||||||| ||||||||||||||||||| ||||||||    
T  25773650 actccctccgttt-caaaatacatgtccattttggagaaatt 25773690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 60
Target Start/End: Complemental strand, 30720768 - 30720728
Alignment:
Q  19 actccctccgttttcaaaatacatgtccattttagagaaatt 60  Q
    ||||||||||||| ||||||||||||||||||| ||||||||    
T  30720768 actccctccgttt-caaaatacatgtccattttggagaaatt 30720728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0257 (Bit Score: 204; Significance: 1e-111; HSPs: 3)
Name: scaffold0257
Description:

Target: scaffold0257; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 30 - 241
Target Start/End: Complemental strand, 23902 - 23691
Alignment:
Q  30 tttcaaaatacatgtccattttagagaaattttttgtttcaaaatacatgtccatttcatagtttaaggatacattttgtctattttacccttgtctacc 129  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23902 tttcaaaatacatgtccattttagagaaattttttgtttcaaaatacatgtccatttcatagtttaaggatacattttgtctattttacccttgtctacc 23803  T
Q  130 aattaattggattctagattttctccacaataattattttccactaataaatgttgacccaattttaagtagatttactcatgtactctcccaagaaatt 229  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||    
T  23802 aattaattggattctagattttctccacaataattattttccactaataaatattgacccaattttaagtagatttactcatgcactctcccaagaaatt 23703  T
Q  230 attttcccatga 241  Q
    ||||||||||||    
T  23702 attttcccatga 23691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0257; HSP #2
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 226 - 362
Target Start/End: Complemental strand, 23654 - 23518
Alignment:
Q  226 aattattttcccatgaatttaattaattttggtattggtattgagagtaattgtgagatggggtaaataaatgtaaaatagaggaaatcaaagacaaggg 325  Q
    ||||||||||| ||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| ||||||||||||||||||||    
T  23654 aattattttcctatgaatttaattaattttggtattggtattgggagtaattatgagatggggtaaataaatgtaaaatggaggaaatcaaagacaaggg 23555  T
Q  326 tataataggaacttttgtgtcaaactagcttgtcctt 362  Q
    |||||||||||||||||||||||||||||||||||||    
T  23554 tataataggaacttttgtgtcaaactagcttgtcctt 23518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0257; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 60
Target Start/End: Original strand, 23468 - 23508
Alignment:
Q  19 actccctccgttttcaaaatacatgtccattttagagaaatt 60  Q
    ||||||||||||| ||||||||||||||||||| ||||||||    
T  23468 actccctccgttt-caaaatacatgtccattttggagaaatt 23508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 204; Significance: 1e-111; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 30 - 241
Target Start/End: Original strand, 25059461 - 25059672
Alignment:
Q  30 tttcaaaatacatgtccattttagagaaattttttgtttcaaaatacatgtccatttcatagtttaaggatacattttgtctattttacccttgtctacc 129  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25059461 tttcaaaatacatgtccattttagagaaattttttgtttcaaaatacatgtccatttcatagtttaaggatacattttgtctattttacccttgtctacc 25059560  T
Q  130 aattaattggattctagattttctccacaataattattttccactaataaatgttgacccaattttaagtagatttactcatgtactctcccaagaaatt 229  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||    
T  25059561 aattaattggattctagattttctccacaataattattttccactaataaatgttgacccaattttaagcagatttactcatgcactctcccaagaaatt 25059660  T
Q  230 attttcccatga 241  Q
    ||||||||||||    
T  25059661 attttcccatga 25059672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 19 - 241
Target Start/End: Original strand, 2910860 - 2911081
Alignment:
Q  19 actccctccgttttcaaaatacatgtccattttagagaaattttttgtttcaaaatacatgtccatttcatagtttaaggatacattttgtctattttac 118  Q
    ||||||||||||| ||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2910860 actccctccgttt-caaaatacatgtctattttaaagaaattttttgtttcaaaatacatgtccatttcatagtttaaggatacattttgtctattttac 2910958  T
Q  119 ccttgtctaccaattaattggattctagattttctccacaataattattttccactaataaatgttgacccaattttaagtagatttactcatgtactct 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  2910959 ccttgtctaccaattaattggattctagattttctccacaataattattttccactaataaatgttgacccaattttaagtagatttactcatgcactct 2911058  T
Q  219 cccaagaaattattttcccatga 241  Q
     |||| |||||||||||| ||||    
T  2911059 tccaaaaaattattttccaatga 2911081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 239 - 362
Target Start/End: Original strand, 25060012 - 25060135
Alignment:
Q  239 tgaatttaattaattttggtattggtattgagagtaattgtgagatggggtaaataaatgtaaaatagaggaaatcaaagacaagggtataataggaact 338  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  25060012 tgaatttaattaattttggtattggtattgagagtaattatgagatggggtaaataaatgtaaaatggaggaaatcaaagacaagggtataataggaact 25060111  T
Q  339 tttgtgtcaaactagcttgtcctt 362  Q
    ||||||||||||||||||||||||    
T  25060112 tttgtgtcaaactagcttgtcctt 25060135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 239 - 362
Target Start/End: Original strand, 2911427 - 2911550
Alignment:
Q  239 tgaatttaattaattttggtattggtattgagagtaattgtgagatggggtaaataaatgtaaaatagaggaaatcaaagacaagggtataataggaact 338  Q
    |||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  2911427 tgaatttaattaattttggtattggtattgggagtaattatgagatggggtaaataaatgtaaaatggaggaaatcaaagacaagggtataataggaact 2911526  T
Q  339 tttgtgtcaaactagcttgtcctt 362  Q
    ||||||||||| ||||||||||||    
T  2911527 tttgtgtcaaattagcttgtcctt 2911550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 60
Target Start/End: Original strand, 10981509 - 10981549
Alignment:
Q  19 actccctccgttttcaaaatacatgtccattttagagaaatt 60  Q
    ||||||||||||| ||||||||||||||||||| ||||||||    
T  10981509 actccctccgttt-caaaatacatgtccattttggagaaatt 10981549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 60
Target Start/End: Complemental strand, 25060185 - 25060145
Alignment:
Q  19 actccctccgttttcaaaatacatgtccattttagagaaatt 60  Q
    ||||||||||||| ||||||||||||||||||| ||||||||    
T  25060185 actccctccgttt-caaaatacatgtccattttggagaaatt 25060145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 60
Target Start/End: Original strand, 27813812 - 27813852
Alignment:
Q  19 actccctccgttttcaaaatacatgtccattttagagaaatt 60  Q
    ||||||||||||| ||||||||||||||||||| ||||||||    
T  27813812 actccctccgttt-caaaatacatgtccattttggagaaatt 27813852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 20 - 60
Target Start/End: Complemental strand, 36453399 - 36453360
Alignment:
Q  20 ctccctccgttttcaaaatacatgtccattttagagaaatt 60  Q
    |||||||||||| ||||||||||||||||||| ||||||||    
T  36453399 ctccctccgttt-caaaatacatgtccattttggagaaatt 36453360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 187; Significance: 1e-101; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 19 - 241
Target Start/End: Original strand, 34222059 - 34222280
Alignment:
Q  19 actccctccgttttcaaaatacatgtccattttagagaaattttttgtttcaaaatacatgtccatttcatagtttaaggatacattttgtctattttac 118  Q
    ||||| |||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  34222059 actccttccgtttt-aaaatacatgtccattttatagaaattttttgtttcaaaatacatgtccatttcataatttaaggatacattttgtctattttac 34222157  T
Q  119 ccttgtctaccaattaattggattctagattttctccacaataattattttccactaataaatgttgacccaattttaagtagatttactcatgtactct 218  Q
    ||||||||| |||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  34222158 ccttgtctatcaattaattgaattttagattttctccacaataattattttccactaataaatgttgacccaattttaagtagatttactcatgcactct 34222257  T
Q  219 cccaagaaattattttcccatga 241  Q
    |||||||||||||||||||||||    
T  34222258 cccaagaaattattttcccatga 34222280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 239 - 362
Target Start/End: Original strand, 34224257 - 34224380
Alignment:
Q  239 tgaatttaattaattttggtattggtattgagagtaattgtgagatggggtaaataaatgtaaaatagaggaaatcaaagacaagggtataataggaact 338  Q
    |||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  34224257 tgaatttaattaattttggtattggtattgggagtaattatgagatggggtaaataaatgtaaaatggaggaaatcaaagacaagggtataataggaact 34224356  T
Q  339 tttgtgtcaaactagcttgtcctt 362  Q
    ||||||||||||||||||||||||    
T  34224357 tttgtgtcaaactagcttgtcctt 34224380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 60
Target Start/End: Original strand, 1102504 - 1102544
Alignment:
Q  19 actccctccgttttcaaaatacatgtccattttagagaaatt 60  Q
    ||||||||||||| ||||||||||||||||||| ||||||||    
T  1102504 actccctccgttt-caaaatacatgtccattttggagaaatt 1102544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 60
Target Start/End: Original strand, 3518909 - 3518949
Alignment:
Q  19 actccctccgttttcaaaatacatgtccattttagagaaatt 60  Q
    ||||||||||||| ||||||||||||||||||| ||||||||    
T  3518909 actccctccgttt-caaaatacatgtccattttggagaaatt 3518949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 60
Target Start/End: Complemental strand, 12970015 - 12969975
Alignment:
Q  19 actccctccgttttcaaaatacatgtccattttagagaaatt 60  Q
    ||||||||||||| ||||||||||||||||||| ||||||||    
T  12970015 actccctccgttt-caaaatacatgtccattttggagaaatt 12969975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 60
Target Start/End: Original strand, 23366790 - 23366830
Alignment:
Q  19 actccctccgttttcaaaatacatgtccattttagagaaatt 60  Q
    ||||||||||||| ||||||||||||||||||| ||||||||    
T  23366790 actccctccgttt-caaaatacatgtccattttggagaaatt 23366830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 60
Target Start/End: Complemental strand, 34224430 - 34224390
Alignment:
Q  19 actccctccgttttcaaaatacatgtccattttagagaaatt 60  Q
    ||||||||||||| ||||||||||||||||||| ||||||||    
T  34224430 actccctccgttt-caaaatacatgtccattttggagaaatt 34224390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 145; Significance: 3e-76; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 30 - 230
Target Start/End: Complemental strand, 19362219 - 19362019
Alignment:
Q  30 tttcaaaatacatgtccattttagagaaattttttgtttcaaaatacatgtccatttcatagtttaaggatacattttgtctattttacccttgtctacc 129  Q
    ||||||||||||||||||||||||||||||||||||||  ||||||||||||  ||| |||||||||||||||||||||||||||||||| |||||||||    
T  19362219 tttcaaaatacatgtccattttagagaaattttttgttgtaaaatacatgtcattttgatagtttaaggatacattttgtctattttaccattgtctacc 19362120  T
Q  130 aattaattggattctagattttctccacaataattattttccactaataaatgttgacccaattttaagtagatttactcatgtactctcccaagaaatt 229  Q
    ||||||||||||||||||| |||||| ||||||||||||| ||| | ||||||||||||||||||||||| |||||||||||| |||||||| |||||||    
T  19362119 aattaattggattctagatgttctcctcaataattattttacaccagtaaatgttgacccaattttaagtggatttactcatgcactctccctagaaatt 19362020  T
Q  230 a 230  Q
    |    
T  19362019 a 19362019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 25 - 222
Target Start/End: Complemental strand, 20543521 - 20543325
Alignment:
Q  25 tccgttttcaaaatacatgtccattttagagaaattttttgtttcaaaatacatgtccatttcatagtttaaggatacattttgtctattttacccttgt 124  Q
    |||||||| |||||| |||||  ||||  ||||| ||||||||||||||||||||||  ||| ||||||||||||||||||||||||||| ||||||||     
T  20543521 tccgtttt-aaaataaatgtcgtttttgaagaaagtttttgtttcaaaatacatgtcattttgatagtttaaggatacattttgtctattctacccttgc 20543423  T
Q  125 ctaccaattaattggattctagattttctccacaataattattttccactaataaatgttgacccaattttaagtagatttactcatgtactctccca 222  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||| |||||||||||| ||| |||||    
T  20543422 ctaccaattaattggattctagattttctccataataattattttccattaataaatgttgacccaattttaagtggatttactcatgcactttccca 20543325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 243 - 362
Target Start/End: Complemental strand, 19361817 - 19361698
Alignment:
Q  243 tttaattaattttggtattggtattgagagtaattgtgagatggggtaaataaatgtaaaatagaggaaatcaaagacaagggtataataggaacttttg 342  Q
    |||||||||||||||||||||||||| |||||||| | ||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||    
T  19361817 tttaattaattttggtattggtattgggagtaattattagatggggtaaataaatataaaatggaggaaatcaaagacaagggtataataggaacttttg 19361718  T
Q  343 tgtcaaactagcttgtcctt 362  Q
    ||||||||||||||||||||    
T  19361717 tgtcaaactagcttgtcctt 19361698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 243 - 362
Target Start/End: Complemental strand, 20541635 - 20541512
Alignment:
Q  243 tttaattaattttggtattggtattgagagtaattgtgagatggggtaaataaatgtaaaatagaggaaatcaaagac----aagggtataataggaact 338  Q
    |||||||| ||||| |||||||||   |||||||| ||||||| ||||||||||||||||| ||||||||||||||||    ||||||||||||||||||    
T  20541635 tttaattagttttgatattggtatcaggagtaattatgagatgaggtaaataaatgtaaaacagaggaaatcaaagacaagtaagggtataataggaact 20541536  T
Q  339 tttgtgtcaaactagcttgtcctt 362  Q
    |||||||| |||||| ||||||||    
T  20541535 tttgtgtcgaactagtttgtcctt 20541512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 89
Target Start/End: Complemental strand, 44569113 - 44569044
Alignment:
Q  19 actccctccgttttcaaaatacatgtccattttagagaaattttttgtttcaaaatacatgtccatttcat 89  Q
    ||||||||||||| || ||||| ||||||||||||||||   |||||||||| ||||| ||||| ||||||    
T  44569113 actccctccgttt-cataatacttgtccattttagagaataattttgtttcacaatacttgtccctttcat 44569044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 60
Target Start/End: Original strand, 12071562 - 12071602
Alignment:
Q  19 actccctccgttttcaaaatacatgtccattttagagaaatt 60  Q
    ||||||||||||| ||||||||||||||||||| ||||||||    
T  12071562 actccctccgttt-caaaatacatgtccattttggagaaatt 12071602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 60
Target Start/End: Original strand, 14261045 - 14261085
Alignment:
Q  19 actccctccgttttcaaaatacatgtccattttagagaaatt 60  Q
    ||||||||||||| ||||||||||||||||||| ||||||||    
T  14261045 actccctccgttt-caaaatacatgtccattttggagaaatt 14261085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 88
Target Start/End: Complemental strand, 14261320 - 14261252
Alignment:
Q  19 actccctccgttttcaaaatacatgtccattttagagaaattttttgtttcaaaatacatgtccatttca 88  Q
    ||||||||||||| || ||||| ||||||||||||||||   |||||||||| ||||| ||||| |||||    
T  14261320 actccctccgttt-cataatacttgtccattttagagaataattttgtttcacaatacttgtccctttca 14261252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 60
Target Start/End: Original strand, 21310426 - 21310466
Alignment:
Q  19 actccctccgttttcaaaatacatgtccattttagagaaatt 60  Q
    ||||||||||||| ||||||||||||||||||| ||||||||    
T  21310426 actccctccgttt-caaaatacatgtccattttggagaaatt 21310466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 88
Target Start/End: Original strand, 24706248 - 24706316
Alignment:
Q  19 actccctccgttttcaaaatacatgtccattttagagaaattttttgtttcaaaatacatgtccatttca 88  Q
    ||||||||||||| || ||||| ||||||||||||||||   |||||||||| ||||| ||||| |||||    
T  24706248 actccctccgttt-cataatacttgtccattttagagaataattttgtttcacaatacttgtccctttca 24706316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 60
Target Start/End: Original strand, 25704652 - 25704692
Alignment:
Q  19 actccctccgttttcaaaatacatgtccattttagagaaatt 60  Q
    ||||||||||||| ||||||||||||||||||| ||||||||    
T  25704652 actccctccgttt-caaaatacatgtccattttggagaaatt 25704692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 60
Target Start/End: Complemental strand, 34324859 - 34324819
Alignment:
Q  19 actccctccgttttcaaaatacatgtccattttagagaaatt 60  Q
    ||||||||||||| ||||||||||||||||||| ||||||||    
T  34324859 actccctccgttt-caaaatacatgtccattttggagaaatt 34324819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 60
Target Start/End: Complemental strand, 40122761 - 40122721
Alignment:
Q  19 actccctccgttttcaaaatacatgtccattttagagaaatt 60  Q
    ||||||||||||| ||||||||||||||||||| ||||||||    
T  40122761 actccctccgttt-caaaatacatgtccattttggagaaatt 40122721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 81
Target Start/End: Complemental strand, 45729 - 45668
Alignment:
Q  19 actccctccgttttcaaaatacatgtccattttagagaaattttttgtttcaaaatacatgtc 81  Q
    ||||||||||||| || ||||| ||||||||||||||||   |||||||||| ||||||||||    
T  45729 actccctccgttt-cataatacttgtccattttagagaataattttgtttcacaatacatgtc 45668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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