View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18190_high_5 (Length: 362)
Name: NF18190_high_5
Description: NF18190
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18190_high_5 |
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Alignment Details
Target: chr7 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 18 - 347
Target Start/End: Original strand, 34428484 - 34428815
Alignment:
| Q |
18 |
attgtaacattattaagcggtgttgacacataatacactagtgttagttaacttgtttgttacatatgtttccttttaactt-gtttagtattctattta |
116 |
Q |
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| T |
34428484 |
attgtaacattattaagcggtggtgacacataatacactagtgttagttaacttgtttgttacatatgtttccttttaactttgtttagtattctattta |
34428583 |
T |
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| Q |
117 |
a-tttccattacattttgttgttgtgactgcagatagattgaatgttgtgaagagagaaatgggtttttcaaaggattcatgctgtgtttttatgctgca |
215 |
Q |
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| T |
34428584 |
aatttccattacattttgttgttgtgactgcagatagattgaatgttgtgaagagagaaatgggtttttcaaaggattcatgctgtgtttttatgctgca |
34428683 |
T |
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| Q |
216 |
actgttgattgtggtttgccttgtggttcaatgctttgatgtgcaagtgcaggctgatttgaatgctacactggttgtagatgcttctcaggcatctgga |
315 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34428684 |
actgttgattgtggtttaccttgtggttcaatgctttgatgtgcaagtgcaggctgatttgaatgctacactggttgtagatgcttctcaggcatctgga |
34428783 |
T |
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| Q |
316 |
agacgaataccagagactctttttggaatatt |
347 |
Q |
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||||||||||| |||||||||||||||||||| |
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| T |
34428784 |
agacgaataccggagactctttttggaatatt |
34428815 |
T |
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