View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18190_low_10 (Length: 263)

Name: NF18190_low_10
Description: NF18190
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18190_low_10
NF18190_low_10
[»] chr6 (9 HSPs)
chr6 (1-241)||(33414494-33414734)
chr6 (1-144)||(31564974-31565117)
chr6 (60-241)||(33269467-33269648)
chr6 (40-241)||(33383951-33384156)
chr6 (17-241)||(33394978-33395204)
chr6 (20-174)||(33258187-33258343)
chr6 (110-241)||(33292947-33293078)
chr6 (21-117)||(33278972-33279068)
chr6 (17-114)||(33280358-33280455)
[»] chr2 (2 HSPs)
chr2 (1-168)||(17447815-17447982)
chr2 (139-225)||(17445607-17445693)
[»] scaffold0428 (3 HSPs)
scaffold0428 (20-174)||(2308-2464)
scaffold0428 (21-117)||(15185-15281)
scaffold0428 (17-114)||(13798-13895)


Alignment Details
Target: chr6 (Bit Score: 157; Significance: 1e-83; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 33414734 - 33414494
Alignment:
Q  1 atccggaagacgagttgctgaaggaagaatcgctacatacattcacgattcacacattagtgttctaattgaagtgaaatgtgaaacggactttatcggt 100  Q
    ||||||||||| ||  |||||||||||||||| |||||||||||||||| |||  ||| ||||||||||||||||||| ||||||||||||||| | ||     
T  33414734 atccggaagactagcagctgaaggaagaatcggtacatacattcacgatgcacgtattggtgttctaattgaagtgaactgtgaaacggactttgttggc 33414635  T
Q  101 agaagtgagaaattcaaggagtttgttcatgatcttgcaatgcaagttgctgcttgtccacaggttcagtttgtatctattgaagatattcctaaaacca 200  Q
    ||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||| |    
T  33414634 agaagtgagaaattcaaggagttggttgatgatcttgcaatgcaagttgctgcttgtccacaggttcagtttgtatctattgaagatattcccgaaacta 33414535  T
Q  201 ctgtgacgaaggaaaaagaacttgaaattcagagagaagac 241  Q
     |||||||||||||||||||||||| || || |||||||||    
T  33414534 ttgtgacgaaggaaaaagaacttgagatgcaaagagaagac 33414494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 1 - 144
Target Start/End: Original strand, 31564974 - 31565117
Alignment:
Q  1 atccggaagacgagttgctgaaggaagaatcgctacatacattcacgattcacacattagtgttctaattgaagtgaaatgtgaaacggactttatcggt 100  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  31564974 atccggaagacgagttgctgaaggaagaatcggtacatacattcacgattcacgcattagtgttctaattgaagtgaaatgtgaaacggactttatcggt 31565073  T
Q  101 agaagtgagaaattcaaggagtttgttcatgatcttgcaatgca 144  Q
    ||||||||||||||||||||||| ||||||||||||||||||||    
T  31565074 agaagtgagaaattcaaggagttggttcatgatcttgcaatgca 31565117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 60 - 241
Target Start/End: Complemental strand, 33269648 - 33269467
Alignment:
Q  60 gtgttctaattgaagtgaaatgtgaaacggactttatcggtagaagtgagaaattcaaggagtttgttcatgatcttgcaatgcaagttgctgcttgtcc 159  Q
    ||||||||||||||||||| |||||||| |||||| | || |||||||||||||||||| |||| ||| |||||||||||||||||||||||||||||||    
T  33269648 gtgttctaattgaagtgaactgtgaaaccgactttgttggcagaagtgagaaattcaagaagttggttgatgatcttgcaatgcaagttgctgcttgtcc 33269549  T
Q  160 acaggttcagtttgtatctattgaagatattcctaaaaccactgtgacgaaggaaaaagaacttgaaattcagagagaagac 241  Q
    |||||||||||||||||||||||||||||||||  |||| | |||||||||||||||||| ||||| || || |||||||||    
T  33269548 acaggttcagtttgtatctattgaagatattcccgaaactattgtgacgaaggaaaaagatcttgagatgcaaagagaagac 33269467  T

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Target: chr6; HSP #4
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 40 - 241
Target Start/End: Complemental strand, 33384156 - 33383951
Alignment:
Q  40 cattcacgattcacacattagtgttctaattgaagtgaaatgtgaaacggactttatcggtagaagtgagaaattcaaggagtttgttcatgatcttgca 139  Q
    ||||||| ||||||||||  ||||||||||||||||||| ||| |||| |||||| |||| |||||||||||| | |||||||| ||| |||||||||||    
T  33384156 cattcactattcacacatcggtgttctaattgaagtgaactgtcaaaccgactttgtcggcagaagtgagaaaattaaggagttggttgatgatcttgca 33384057  T
Q  140 atgcaagttgc----tgcttgtccacaggttcagtttgtatctattgaagatattcctaaaaccactgtgacgaaggaaaaagaacttgaaattcagaga 235  Q
    |||||||| ||    |||||||||| ||||||||||||||||| |||||||||||| | |||||| ||||||||||||||||||||||||  | ||||||    
T  33384056 atgcaagtggctgcttgcttgtccagaggttcagtttgtatctgttgaagatattcttgaaaccattgtgacgaaggaaaaagaacttgagttgcagaga 33383957  T
Q  236 gaagac 241  Q
    ||||||    
T  33383956 gaagac 33383951  T

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Target: chr6; HSP #5
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 17 - 241
Target Start/End: Complemental strand, 33395204 - 33394978
Alignment:
Q  17 gctgaaggaagaatcgctacatacattcacgattcacacattagtgttctaattgaagtgaaatgtgaaacggactttatcggta--gaagtgagaaatt 114  Q
    |||||||||||||||| || ||||||| ||||| ||| |||   |||||| ||||||||||| |||||||| |||||| | || |  ||||||| | |||    
T  33395204 gctgaaggaagaatcggtaaatacattgacgatgcacgcatctatgttctgattgaagtgaactgtgaaaccgactttgttggcacagaagtgatagatt 33395105  T
Q  115 caaggagtttgttcatgatcttgcaatgcaagttgctgcttgtccacaggttcagtttgtatctattgaagatattcctaaaaccactgtgacgaaggaa 214  Q
    ||||||||| |||  ||||||| ||||||||   ||||||||||||||||||||||||||||||||||||| ||||| | |||||| || ||||||||||    
T  33395104 caaggagttggttgctgatctttcaatgcaataggctgcttgtccacaggttcagtttgtatctattgaaggtattcttgaaaccattgcgacgaaggaa 33395005  T
Q  215 aaagaacttgaaattcagagagaagac 241  Q
    |||||||| || ||  |||||||||||    
T  33395004 aaagaactcgagatgtagagagaagac 33394978  T

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Target: chr6; HSP #6
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 20 - 174
Target Start/End: Complemental strand, 33258343 - 33258187
Alignment:
Q  20 gaaggaagaatcgctacata-cattcacgattcacacattagtgttctaattgaagtgaaatgtgaaacggactttatcggtagaagtgagaaattcaag 118  Q
    ||||||||||||| |||||| || || ||||||||||||| |||||||||||||||||||  ||||||| |||||| | || |||||||||||||| |||    
T  33258343 gaaggaagaatcggtacatatcactcgcgattcacacattggtgttctaattgaagtgaacggtgaaaccgactttgttggcagaagtgagaaatttaag 33258244  T
Q  119 gagtttgttcatgatcttgcaatgcaagttgctgctt-gtccacaggttcagtttgt 174  Q
    ||||| ||| | ||||||||||||||||| |||  || |||||||||||||||||||    
T  33258243 gagttggttgacgatcttgcaatgcaagtagctttttggtccacaggttcagtttgt 33258187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 110 - 241
Target Start/End: Complemental strand, 33293078 - 33292947
Alignment:
Q  110 aaattcaaggagtttgttcatgatcttgcaatgcaagttgctgcttgtccacaggttcagtttgtatctattgaagatattcctaaaaccactgtgacga 209  Q
    |||||||||||||| ||| ||||||||||||||||||||||||||  ||  |||||||||||||||||||||||||||||||  ||||||| |||  |||    
T  33293078 aaattcaaggagttggttaatgatcttgcaatgcaagttgctgctattcttcaggttcagtttgtatctattgaagatattctcaaaaccattgtcgcga 33292979  T
Q  210 aggaaaaagaacttgaaattcagagagaagac 241  Q
    |||||||||||||| | || || |||||||||    
T  33292978 aggaaaaagaacttaagatgcaaagagaagac 33292947  T

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Target: chr6; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 21 - 117
Target Start/End: Complemental strand, 33279068 - 33278972
Alignment:
Q  21 aaggaagaatcgctacatacattcacgattcacacattagtgttctaattgaagtgaaatgtgaaacggactttatcggtagaagtgagaaattcaa 117  Q
    |||||||||| | |||||||||||||||||||||||| ||||||||||||||||| || |||||||| ||||||   || |||||| ||||||||||    
T  33279068 aaggaagaattggtacatacattcacgattcacacatcagtgttctaattgaagttaactgtgaaaccgactttgatggcagaagttagaaattcaa 33278972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 17 - 114
Target Start/End: Complemental strand, 33280455 - 33280358
Alignment:
Q  17 gctgaaggaagaatcgctacatacattcacgattcacacattagtgttctaattgaagtgaaatgtgaaacggactttatcggtagaagtgagaaatt 114  Q
    ||||||||| |||||  ||| |||||||||||||||| |||| || ||||| ||||||| || ||||| || |||||| | || ||||||||||||||    
T  33280455 gctgaaggaggaatcagtacctacattcacgattcacgcattggttttctatttgaagttaactgtgatactgacttttttggcagaagtgagaaatt 33280358  T

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Target: chr2 (Bit Score: 76; Significance: 3e-35; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 168
Target Start/End: Original strand, 17447815 - 17447982
Alignment:
Q  1 atccggaagacgagttgctgaaggaagaatcgctacatacattcacgattcacacattagtgttctaattgaagtgaaatgtgaaacggactttatcggt 100  Q
    |||||||||||  |  |||||||||||||||| |||||||||||||||| ||| |||  ||| |||||||||| |||| | |||||| |||||| | ||     
T  17447815 atccggaagactggcagctgaaggaagaatcggtacatacattcacgatgcacgcatcggtggtctaattgaattgaactttgaaaccgactttgttggc 17447914  T
Q  101 agaagtgagaaattcaaggagtttgttcatgatcttgcaatgcaagttgctgcttgtccacaggttca 168  Q
    ||||| |||| |||||||||||| ||| ||||||||||||||||||| ||||||| ||||||||||||    
T  17447915 agaagggagagattcaaggagttggttgatgatcttgcaatgcaagtggctgcttttccacaggttca 17447982  T

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Target: chr2; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 139 - 225
Target Start/End: Original strand, 17445607 - 17445693
Alignment:
Q  139 aatgcaagttgctgcttgtccacaggttcagtttgtatctattgaagatattcctaaaaccactgtgacgaaggaaaaagaacttga 225  Q
    ||||||||||| |||||||||||| |||||||||||||||||||||||||||||  |||||| ||||| ||||||||||||||||||    
T  17445607 aatgcaagttgatgcttgtccacatgttcagtttgtatctattgaagatattcccgaaaccattgtgaagaaggaaaaagaacttga 17445693  T

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Target: scaffold0428 (Bit Score: 73; Significance: 2e-33; HSPs: 3)
Name: scaffold0428
Description:

Target: scaffold0428; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 20 - 174
Target Start/End: Complemental strand, 2464 - 2308
Alignment:
Q  20 gaaggaagaatcgctacata-cattcacgattcacacattagtgttctaattgaagtgaaatgtgaaacggactttatcggtagaagtgagaaattcaag 118  Q
    ||||||||||||| |||||| || || ||||||||||||| |||||||||||||||||||  ||||||| |||||| | || |||||||||||||| |||    
T  2464 gaaggaagaatcggtacatatcactcgcgattcacacattggtgttctaattgaagtgaacggtgaaaccgactttgttggcagaagtgagaaatttaag 2365  T
Q  119 gagtttgttcatgatcttgcaatgcaagttgctgctt-gtccacaggttcagtttgt 174  Q
    ||||| ||| | ||||||||||||||||| |||  || |||||||||||||||||||    
T  2364 gagttggttgacgatcttgcaatgcaagtagctttttggtccacaggttcagtttgt 2308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 21 - 117
Target Start/End: Original strand, 15185 - 15281
Alignment:
Q  21 aaggaagaatcgctacatacattcacgattcacacattagtgttctaattgaagtgaaatgtgaaacggactttatcggtagaagtgagaaattcaa 117  Q
    |||||||||| | |||||||||||||||||||||||| ||||||||||||||||| || |||||||| ||||||   || |||||| ||||||||||    
T  15185 aaggaagaattggtacatacattcacgattcacacatcagtgttctaattgaagttaactgtgaaaccgactttgatggcagaagttagaaattcaa 15281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 17 - 114
Target Start/End: Original strand, 13798 - 13895
Alignment:
Q  17 gctgaaggaagaatcgctacatacattcacgattcacacattagtgttctaattgaagtgaaatgtgaaacggactttatcggtagaagtgagaaatt 114  Q
    ||||||||| |||||  ||| |||||||||||||||| |||| || ||||| ||||||| || ||||| || |||||| | || ||||||||||||||    
T  13798 gctgaaggaggaatcagtacctacattcacgattcacgcattggttttctatttgaagttaactgtgatactgacttttttggcagaagtgagaaatt 13895  T

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