View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18190_low_3 (Length: 468)
Name: NF18190_low_3
Description: NF18190
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18190_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 325; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 13 - 450
Target Start/End: Complemental strand, 3715621 - 3715193
Alignment:
| Q |
13 |
gtgagatgaaaggtggaggagggg--aggttgtggtccaaatagtggagccaacaaacccgtgcactgcaatctttctagggacgaataatgtgggttgc |
110 |
Q |
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| T |
3715621 |
gtgaaatgaaaggtagaggaggggggaggttgtggtccaaatagtggagccaacaaacccgtgcactgcaatctttccagggacgaataatgtgggttgc |
3715522 |
T |
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| Q |
111 |
tactactacaatatctgattcttcaattattttctgtcacattttctccagctccagctttatcatctatcatcctatcctatcgatatattcagcnnnn |
210 |
Q |
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| T |
3715521 |
tactattacaatatttgattcttcaattattttctgtcacattttctccagctccagctttatcatctatcatcctatcctatcgatatattcagcaaaa |
3715422 |
T |
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| Q |
211 |
nnntatttctatacaaatttttaaacttaaatttgaaattgtgtattagctagatagtgactttatattaaacttttaagtaaaaatatctaaaaacaaa |
310 |
Q |
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| T |
3715421 |
aaatatttctatacaaatttttaaacttaaatttgaaattgtgtattagctaaataatgactttatattaaac-tttaagtaaaaatatctaaaaacaaa |
3715323 |
T |
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| Q |
311 |
ttgttttgctcaatggtaaattcaattcattaagaattacaattatcaaaggcactcaaagacaatttgtttgtatattcaaatgttatgatattaaaaa |
410 |
Q |
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| T |
3715322 |
ttgttttgctcaatagtaaattcaattcattaagaattacaattatcaaaggcacccaaagacaatttgtt----------aatgttatgatattaaaaa |
3715233 |
T |
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| Q |
411 |
tgataaaatctaatgcggcaaccaataggctactctatgt |
450 |
Q |
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| T |
3715232 |
tgataaaatctaatgcggcaaccaataggttactctatgt |
3715193 |
T |
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