View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18190_low_4 (Length: 405)
Name: NF18190_low_4
Description: NF18190
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18190_low_4 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 371; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 20 - 398
Target Start/End: Original strand, 48873817 - 48874195
Alignment:
| Q |
20 |
tgctggtttgtctgcaaatatgcgttatacattttactgtagttactgagatgttgtttcttggaaattctgaaatgctcttattacattagctggcaaa |
119 |
Q |
| |
|
||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48873817 |
tgctggtttgtctgcaaatatgcgtgatacattgtactgtagttactgagatgttgtttcttggaaattctgaaatgctcttattacattagctggcaaa |
48873916 |
T |
|
| Q |
120 |
tttcgttaatattaattgacatattaaattaccagtcttcattgggtcttagtattatactggtgttttgcagctatcatttggcagttaccagagtgat |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48873917 |
tttcgttaatattaattgacatattaaattaccagtcttcattgggtcttagtattatactggtgttttgcagctatcatttggcagttaccagagtgat |
48874016 |
T |
|
| Q |
220 |
gagcaggcatggattgatacaattaaatctgtaggaacaaaagatacggttagaatcaataccatggactggctaggtcagtcacaatttacagaccaaa |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48874017 |
gagcaggcatggattgatacaattaaatctgtaggaacaaaagatacggttagaatcaataccatggactggctaggtcagtcacaatttacagaccaaa |
48874116 |
T |
|
| Q |
320 |
caattttctggtcatctctgtcttctgcaatatcagaggtaactaaactaacttccaagtgttctttgcatattctctg |
398 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48874117 |
caattttctggtcatctctgtcttctgcaatatcagaggtaactaaactaacttccaagtgttctttgcatattctctg |
48874195 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 241 - 299
Target Start/End: Original strand, 18415391 - 18415449
Alignment:
| Q |
241 |
attaaatctgtaggaacaaaagatacggttagaatcaataccatggactggctaggtca |
299 |
Q |
| |
|
|||||||||| ||||||||| || | |||||||||||||||||||||||| ||||||| |
|
|
| T |
18415391 |
attaaatctgcaggaacaaatgagagtgttagaatcaataccatggactggttaggtca |
18415449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University