View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18190_low_7 (Length: 345)
Name: NF18190_low_7
Description: NF18190
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18190_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 1 - 329
Target Start/End: Original strand, 34407115 - 34407450
Alignment:
| Q |
1 |
gtgtggaaatacaacaacaaaggcatttatatgataaagtctgcatactagtccgcaatggaaacactcattgacaatgaggagtatcgaatttaaggtg |
100 |
Q |
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| T |
34407115 |
gtgtggaaatacaacaacaaaggcatttatatgataaagtctgcatactagtccgcaatggaaacactcattgacaatgaggagtatcgaatttaaggtg |
34407214 |
T |
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| Q |
101 |
attggagtaaactatagagctt---acaaatacctcaaagagttaaaagatttttgtggagagtatcgagaggatgtcttccaacaagagaccgactaca |
197 |
Q |
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| T |
34407215 |
attggagtaaactatatagcttcttacaaatacctcaaagagttaaaagatttttgtggagagtagcgagaggatgtcttccaacaagagaccgactaca |
34407314 |
T |
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| Q |
198 |
atggaaaggtgttcaatgtacatatgcatgtcctttttgtaaaaatcactacgaaaatgaatggcgtttgttcctcggttgcagaaagcctaaggaa--- |
294 |
Q |
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| T |
34407315 |
atggaaaggtgttcaatgtacatatgcatgtcctttttgtaaaaatcactactaaaatgaatggcatttgttcctcggttgcagaaagcctaaggaagta |
34407414 |
T |
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| Q |
295 |
-aggagacgattggttcgtggtcacatattaattct |
329 |
Q |
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| T |
34407415 |
tgggagacgattggttcgtggtcacatattaattct |
34407450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 55 - 244
Target Start/End: Original strand, 2422098 - 2422287
Alignment:
| Q |
55 |
gcaatggaaacactcattgacaatgaggagtatcgaatttaaggtgattggagtaaactatagagcttacaaatacctcaaagagttaaaagatttttgt |
154 |
Q |
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| T |
2422098 |
gcaatggaaacactcattgataatgagaagtatcgaattccgagtgattggggtaagctatgaagcttgaagataccacaaagagttaaaatattattgt |
2422197 |
T |
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| Q |
155 |
ggagagtatcgagaggatgtcttccaacaagagaccgactacaatggaaaggtgttcaatgtacatatgcatgtcctttttgtaaaaatc |
244 |
Q |
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| T |
2422198 |
ggcgagttgtgaaaggttgcctttcaacaagggatatatttcaaagaaaaggtgttcaatgtacaaatgcatgtcctttttgtgaaaatc |
2422287 |
T |
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