View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18191_high_11 (Length: 213)
Name: NF18191_high_11
Description: NF18191
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18191_high_11 |
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| [»] chr1 (4 HSPs) |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 204; Significance: 1e-111; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 2 - 213
Target Start/End: Original strand, 722550 - 722761
Alignment:
| Q |
2 |
gacaatcattaggagtataatatgccgcttgtggtagcatgtgagtaggaaggctagcagtcccgttaagatttgcacgatataactcttgctgctcggt |
101 |
Q |
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| T |
722550 |
gacaatcattaggagtataatatgctgcttgtggtagcatgtgagtaggaaggctagcagtcccgtaaagatttgcacgatataactcttgctgctcggt |
722649 |
T |
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| Q |
102 |
aacaccattataaatcacatgttcaataatatctgtaaacgctctaatacatacttcattgatgtactttgtgacatcagtgatcaattcgaggcgtttt |
201 |
Q |
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| T |
722650 |
aacaccattataaatcacatgttcaataatatctgtaaacgctctaatacatacttcattgatgtactttgtgacatcagtgatcaattcgaggcgtttt |
722749 |
T |
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| Q |
202 |
tcatggaaaaac |
213 |
Q |
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| T |
722750 |
tcatggaaaaac |
722761 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 123 - 213
Target Start/End: Original strand, 18331317 - 18331407
Alignment:
| Q |
123 |
ttcaataatatctgtaaacgctctaatacatacttcattgatgtactttgtgacatcagtgatcaattcgaggcgtttttcatggaaaaac |
213 |
Q |
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| T |
18331317 |
ttcaataatatctgtaaaagctctaacacatacatcattgatgatcttggtgacaccagtgatcacttcgaggcgtttttcatggaaaaac |
18331407 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 121 - 212
Target Start/End: Complemental strand, 17616536 - 17616445
Alignment:
| Q |
121 |
tgttcaataatatctgtaaacgctctaatacatacttcattgatgtactttgtgacatcagtgatcaattcgaggcgtttttcatggaaaaa |
212 |
Q |
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| T |
17616536 |
tgttcaattatatctgtaaaagctctaatacagacattattaatgaactttgtgacatcaatgatcagctcgaggcgtttttcatggaaaaa |
17616445 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 121 - 213
Target Start/End: Complemental strand, 46441332 - 46441240
Alignment:
| Q |
121 |
tgttcaataatatctgtaaacgctctaatacatacttcattgatgtactttgtgacatcagtgatcaattcgaggcgtttttcatggaaaaac |
213 |
Q |
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| T |
46441332 |
tgttcaatgatatccgtaaaagctctaacacatacatcattgatgaacttggtgatgtcattgatcacttcgaggcgtttttcatggaaaaac |
46441240 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 213
Target Start/End: Complemental strand, 11574714 - 11574622
Alignment:
| Q |
121 |
tgttcaataatatctgtaaacgctctaatacatacttcattgatgtactttgtgacatcagtgatcaattcgaggcgtttttcatggaaaaac |
213 |
Q |
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| T |
11574714 |
tgttcaataatatcctcaaaagctataacacacacatcattgattaacttggtgacatcattgattacttcgaggcgttttttatgaaaaaac |
11574622 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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