View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18191_high_12 (Length: 204)
Name: NF18191_high_12
Description: NF18191
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18191_high_12 |
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Alignment Details
Target: chr5 (Bit Score: 157; Significance: 1e-83; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 1 - 186
Target Start/End: Complemental strand, 13299810 - 13299624
Alignment:
| Q |
1 |
tataatattatttaaatcaacatagatattctaatctaactaagcaccttcttccctttcatccaatacctttctgcttataaaactttctctttgcatc |
100 |
Q |
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| T |
13299810 |
tataatattatttaaatcaacatagatattctaatctaactaagcaccttcttccctttcacccaatacctttctgcttataaaactttctc-ttgcatc |
13299712 |
T |
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| Q |
101 |
ttacaact--caaaatggaaactcttcttcctgcaccaacaatcactctcactcatctttaatcaatattaaccaagtaagattctta |
186 |
Q |
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|||||||| |||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
13299711 |
ttacaactcacaaaatggaaactcttcttcctgcaccatcaatcaccctcactcatctttaatcaatattaaccaagtaagattctta |
13299624 |
T |
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