View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18191_high_13 (Length: 201)
Name: NF18191_high_13
Description: NF18191
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18191_high_13 |
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Alignment Details
Target: chr3 (Bit Score: 145; Significance: 2e-76; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 18 - 194
Target Start/End: Original strand, 20767029 - 20767205
Alignment:
| Q |
18 |
tagccatctctaaacaaaacagaggccacaaacagagtgcacaatcaatattcactaacccagaaatgaaaaaacgcgaacaacatatctgaatagttaa |
117 |
Q |
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|||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||| |
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| T |
20767029 |
tagccatctctaaacaaaacagagaccacaaatagagtgcacaatcaatattcactaacccataaatgaaaaaacgcgaacaacatatctgaaaagttaa |
20767128 |
T |
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| Q |
118 |
agcagattaaattattcaccatttcgaacgaatatgaaatcaatgtgaagaagaaatggaaaatatgattgatgatg |
194 |
Q |
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|||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| |
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| T |
20767129 |
agcagattaaatcattcaccatttcgaacgaatatgaaatttatgtgaagaagaaatggaaaatatgattgaagatg |
20767205 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 18 - 186
Target Start/End: Complemental strand, 8303996 - 8303828
Alignment:
| Q |
18 |
tagccatctctaaacaaaacagaggccacaaacagagtgcacaatcaatattcactaacccagaaatgaaaaaacgcgaacaacatatctgaatagttaa |
117 |
Q |
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|||||||||||||||||||||||| ||| |||||| | ||||| ||| |||| | ||||||| |||| |||||| |||||||||||| |||| |||||| |
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| T |
8303996 |
tagccatctctaaacaaaacagagaccataaacagggagcacagtcagtatttagtaacccaaaaatacaaaaacacgaacaacatatatgaaaagttaa |
8303897 |
T |
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| Q |
118 |
agcagattaaattattcaccatttcgaacgaatatgaaatcaatgtgaagaagaaatggaaaatatgat |
186 |
Q |
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| T |
8303896 |
agcagattacaatattcaccattttgaataaatatgaaatcaatgtgaagaagaaacggaaaagatgat |
8303828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 148 - 194
Target Start/End: Complemental strand, 32869483 - 32869437
Alignment:
| Q |
148 |
aatatgaaatcaatgtgaagaagaaatggaaaatatgattgatgatg |
194 |
Q |
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|||||| |||||||||||||||||| ||||||| ||||| ||||||| |
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| T |
32869483 |
aatatgcaatcaatgtgaagaagaattggaaaagatgatggatgatg |
32869437 |
T |
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