View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18191_high_5 (Length: 388)
Name: NF18191_high_5
Description: NF18191
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18191_high_5 |
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Alignment Details
Target: chr5 (Bit Score: 349; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 10 - 378
Target Start/End: Original strand, 568640 - 569008
Alignment:
| Q |
10 |
catcatcagaggcttttcgttgttgggttggagacttggaaaacagctaccacttgtcaggttcagcggtgggaccacatccatgtcccaccatggtacg |
109 |
Q |
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| T |
568640 |
catcatcagaggcttttcgttgttgggttggagacctggaaaacagctaccacttgtcaggttcagcggtgggaccacatccatgtcccaccatggtacg |
568739 |
T |
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| Q |
110 |
tgagtttcagtcagtgattgggaaagaaacaaggaaacaagcatgggaaaaatggggaggaaaaccagacattattgttgcaagtgttggaacaggttca |
209 |
Q |
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| T |
568740 |
tgagtttcagtcagtgattgggaaagaaacaaggaaacaagcatgggaaaaatggggaggaaaaccagacattattgttgcaagtgttggaacaggttca |
568839 |
T |
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| Q |
210 |
aatgctttaggtatgttccatgagtttctatcagacatagatgtgagattgattggagttgaagctgctggtttagggttagaaagtggaaaacattctt |
309 |
Q |
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| T |
568840 |
aatgctttaggtatgttccatgagtttctatcagacacagatgtgagattgattggagttgaagctgctggtttagggttagaaagtggaaaacattctt |
568939 |
T |
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| Q |
310 |
ccactttggccaaaggagaaatgggtgtttatcatggtgctatctcctatttattacaagatgatgatg |
378 |
Q |
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| T |
568940 |
ccactttaaccaaaggagaaatgggtgtttatcatggtgctatctcctatttattacaagatggtgatg |
569008 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 84 - 199
Target Start/End: Original strand, 20172427 - 20172542
Alignment:
| Q |
84 |
ccacatccatgtcccaccatggtacgtgagtttcagtcagtgattgggaaagaaacaaggaaacaagcatgggaaaaatggggaggaaaaccagacatta |
183 |
Q |
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| T |
20172427 |
ccacatccatatcctatgatggtaagagagtttcatgcagtgatagggaaagaaacaagaaagcaagcattggaaaaatggggagggaagccagatattc |
20172526 |
T |
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| Q |
184 |
ttgttgcaagtgttgg |
199 |
Q |
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| T |
20172527 |
tagtagcatgtgttgg |
20172542 |
T |
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